RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 KCTD1Q719H9 257 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 TLK2Q86UE8 772 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 STAG1Q8WVM7 1258 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 TRERF1Q96PN7 1200 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 KATNBL1Q9H079 304 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 ZNF536O15090 1300 aa17.45■□□□□ 0.38
PNKP-202ENST00000593706 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.44■□□□□ 0.38
PNKP-202ENST00000593706 CSF2RAP15509 400 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 CDK7P50613 346 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 CTDSPL2Q05D32 466 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 GRIN2CQ14957 1233 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 CCDC96Q2M329 555 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 PSRC1Q6PGN9 363 aaPredicted RBP17.44■□□□□ 0.38
PNKP-202ENST00000593706 FAM126BQ8IXS8 530 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 EXOC6Q8TAG9 804 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 TIFAQ96CG3 184 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 AP5M1Q9H0R1 490 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 ZNF576Q9H609 170 aa17.44■□□□□ 0.38
PNKP-202ENST00000593706 ZBTB47Q9UFB7 747 aaPredicted RBP17.44■□□□□ 0.38
PNKP-202ENST00000593706 NCOR1O75376 2440 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 SOWAHBA6NEL2 793 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 RANBP6O60518 1105 aaKnown RBP17.43■□□□□ 0.38
PNKP-202ENST00000593706 SNAP25P60880 206 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 FSCN1Q16658 493 aaKnown RBP17.43■□□□□ 0.38
PNKP-202ENST00000593706 CXCL17Q6UXB2 119 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 RASGRP2Q7LDG7 609 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 SMC5Q8IY18 1101 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 CCPG1Q9ULG6 757 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 KIAA1217Q5T5P2 1943 aa17.43■□□□□ 0.38
PNKP-202ENST00000593706 CTAGE5O15320 804 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 NMT2O60551 498 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 ACRP10323 421 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 CYP2C18P33260 490 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 TMEM240Q5SV17 173 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 RCSD1Q6JBY9 416 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 NSMFQ6X4W1 530 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 EEPD1Q7L9B9 569 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 FBXO16Q8IX29 292 aaPredicted RBP17.42■□□□□ 0.38
PNKP-202ENST00000593706 TOMM22Q9NS69 142 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 PRR12Q9ULL5 1215 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.42■□□□□ 0.38
PNKP-202ENST00000593706 TRIP12Q14669 1992 aaPredicted RBP17.42■□□□□ 0.38
PNKP-202ENST00000593706 ASTN1O14525 1302 aa17.42■□□□□ 0.38
PNKP-202ENST00000593706 ZEB2O60315 1214 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 PLA2G6O60733 806 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 CABYRO75952 493 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 MUM1L1Q5H9M0 696 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 ZNF365Q70YC5 407 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 GAS2L1Q99501 681 aaPredicted RBP17.41■□□□□ 0.38
PNKP-202ENST00000593706 MTIF3Q9H2K0 278 aaKnown RBP17.41■□□□□ 0.38
PNKP-202ENST00000593706 HIPK3Q9H422 1215 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 IL17RBQ9NRM6 502 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 CYP39A1Q9NYL5 469 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 DDX49Q9Y6V7 483 aaKnown RBP17.41■□□□□ 0.38
PNKP-202ENST00000593706 XIRP2A4UGR9 3374 aa17.41■□□□□ 0.38
PNKP-202ENST00000593706 SCN10AQ9Y5Y9 1956 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 GRXCR1A8MXD5 290 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 CD4P01730 458 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 NKX3-2P78367 333 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 ITGA7Q13683 1181 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 ANKRD45Q5TZF3 282 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 C16orf59Q7L2K0 433 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 DCAF4Q8WV16 495 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 PBX4Q9BYU1 374 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 IL23AQ9NPF7 189 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 INCENPQ9NQS7 918 aa17.4■□□□□ 0.38
PNKP-202ENST00000593706 GNEQ9Y223 722 aaKnown RBP17.4■□□□□ 0.38
PNKP-202ENST00000593706 BDP1A6H8Y1 2624 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 MYH7BA7E2Y1 1941 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 FOXP2O15409 715 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 DYNC1LI2O43237 492 aaPredicted RBP17.39■□□□□ 0.37
PNKP-202ENST00000593706 IGHDP01880 384 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 ICAM1P05362 532 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 SMPD1P17405 629 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 PBX2P40425 430 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 PDE1AP54750 535 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 RRP12Q5JTH9 1297 aaKnown RBP17.39■□□□□ 0.37
PNKP-202ENST00000593706 SYMPKQ92797 1274 aaKnown RBP17.39■□□□□ 0.37
PNKP-202ENST00000593706 VTA1Q9NP79 307 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 PDGFCQ9NRA1 345 aa17.39■□□□□ 0.37
PNKP-202ENST00000593706 SUPT16HQ9Y5B9 1047 aaKnown RBP17.39■□□□□ 0.37
PNKP-202ENST00000593706 PTGS1P23219 599 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 RAB30Q15771 203 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 RASIP1Q5U651 963 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 VPS53Q5VIR6 699 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 IQSEC1Q6DN90 963 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 USP38Q8NB14 1042 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 ADD3Q9UEY8 706 aaKnown RBP17.38■□□□□ 0.37
PNKP-202ENST00000593706 MSRAQ9UJ68 235 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 ANAPC4Q9UJX5 808 aa17.38■□□□□ 0.37
PNKP-202ENST00000593706 PTPDC1A2A3K4 754 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 ORC4O43929 436 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 SLC16A2P36021 539 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 PSMC6P62333 389 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 TAPT1Q6NXT6 567 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 KIAA1211Q6ZU35 1233 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 SLC43A3Q8NBI5 491 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 PPM1EQ8WY54 764 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 EVI5LQ96CN4 794 aa17.37■□□□□ 0.37
PNKP-202ENST00000593706 PURBQ96QR8 312 aaKnown RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms