RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZSCAN10Q96SZ4 725 aaPredicted RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 TSEN34Q9BSV6 310 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 SEZ6LQ9BYH1 1024 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 RANBP17Q9H2T7 1088 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 KAT14Q9H8E8 782 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 RAVER2Q9HCJ3 691 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 ZSWIM5Q9P217 1185 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 ADD3Q9UEY8 706 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 FAM184BQ9ULE4 1060 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 PRR12Q9ULL5 1215 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 ISY1Q9ULR0 285 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 WDR19Q8NEZ3 1342 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 ERICH2A1L162 156 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 NMT2O60551 498 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 CLTBP09497 229 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 PDHBP11177 359 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 HAND2P61296 217 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 ZNF543Q08ER8 600 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 CCDC96Q2M329 555 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 ASPRV1Q53RT3 343 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 BMP2KLQ5H9B9 411 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 SYDE2Q5VT97 1194 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 CASC1Q6TDU7 716 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 TBC1D10CQ8IV04 446 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 TMTC2Q8N394 836 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 TRERF1Q96PN7 1200 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 SPC25Q9HBM1 224 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 INCENPQ9NQS7 918 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 RIPK3Q9Y572 518 aa12.29□□□□□ -0.44
LIG3-212ENST00000590181 LRRC37A2A6NM11 1700 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 SGSM2O43147 1006 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 PQBP1O60828 265 aaKnown RBP12.28□□□□□ -0.44
LIG3-212ENST00000590181 KDM4AO75164 1064 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 DUSP11O75319 330 aaKnown RBP12.28□□□□□ -0.44
LIG3-212ENST00000590181 GSPT1P15170 499 aaKnown RBP12.28□□□□□ -0.44
LIG3-212ENST00000590181 TLE2Q04725 743 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 TJAP1Q5JTD0 557 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 PRAMEF19Q5SWL8 479 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 KCTD1Q719H9 257 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 USP38Q8NB14 1042 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 PNMA1Q8ND90 353 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 MAP4K1Q92918 833 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 XPNPEP3Q9NQH7 507 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 RNF146Q9NTX7 359 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 MAP3K20Q9NYL2 800 aaKnown RBP12.28□□□□□ -0.44
LIG3-212ENST00000590181 CCPG1Q9ULG6 757 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 PHF24Q9UPV7 400 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 MCM3APO60318 1980 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 REV3LO60673 3130 aa12.28□□□□□ -0.44
LIG3-212ENST00000590181 CHD7Q9P2D1 2997 aa12.27□□□□□ -0.44
LIG3-212ENST00000590181 TRANK1O15050 2925 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 MOXD2PA6NHM9 499 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 PGK2P07205 417 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 RAG1P15918 1043 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 DNAJB2P25686 324 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 ITGB8P26012 769 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 EPHB4P54760 987 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 FPGSQ05932 587 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 IFIT1BQ5T764 474 aaKnown RBP12.27□□□□□ -0.45
LIG3-212ENST00000590181 ERICH6BQ5W0A0 696 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 RALYLQ86SE5 291 aaKnown RBP12.27□□□□□ -0.45
LIG3-212ENST00000590181 FAM133AQ8N9E0 248 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 PCSK9Q8NBP7 692 aaKnown RBP12.27□□□□□ -0.45
LIG3-212ENST00000590181 DNERQ8NFT8 737 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 NCOA7Q8NI08 942 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 NUP133Q8WUM0 1156 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 Q9Y3F1 56 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 TACC3Q9Y6A5 838 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 ZNF536O15090 1300 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 NCOR1O75376 2440 aa12.27□□□□□ -0.45
LIG3-212ENST00000590181 A0A1W2PQ45 241 aaPredicted RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 A0A1W2PQY0 241 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 B4E1Z4 1266 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 KIAA0355O15063 1070 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 PARP1P09874 1014 aaKnown RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 ZNF865P0CJ78 1059 aaPredicted RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 ALAS1P13196 640 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 NKX3-2P78367 333 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 ACVR2BQ13705 512 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 RNF20Q5VTR2 975 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 IQSEC1Q6DN90 963 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 MCF2L2Q86YR7 1114 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 ENAHQ8N8S7 591 aaPredicted RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 MORC4Q8TE76 937 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 LENG1Q96BZ8 264 aaPredicted RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 AGBL1Q96MI9 1066 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 MAP3K14Q99558 947 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 A1CFQ9NQ94 594 aaKnown RBP12.26□□□□□ -0.45
LIG3-212ENST00000590181 NEDD4P46934 1319 aa12.26□□□□□ -0.45
LIG3-212ENST00000590181 SNAI1O95863 264 aaPredicted RBP12.25□□□□□ -0.45
LIG3-212ENST00000590181 PGK1P00558 417 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 CST5P28325 142 aaPredicted RBP12.25□□□□□ -0.45
LIG3-212ENST00000590181 SMARCA1P28370 1054 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 IRX6P78412 446 aaPredicted RBP12.25□□□□□ -0.45
LIG3-212ENST00000590181 GRIN2CQ14957 1233 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 VTA1Q9NP79 307 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.25□□□□□ -0.45
LIG3-212ENST00000590181 CYP39A1Q9NYL5 469 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 TNKSO95271 1327 aa12.25□□□□□ -0.45
LIG3-212ENST00000590181 TNFRSF10AO00220 468 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms