RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 DNAH12Q6ZR08 3092 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 AK9Q5TCS8 1911 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 FRMPD3Q5JV73 1810 aa10.12□□□□□ -0.79
SMAD4-209ENST00000589941 SH3TC1Q8TE82 1336 aa10.12□□□□□ -0.79
SMAD4-209ENST00000589941 IRS2Q9Y4H2 1338 aa10.12□□□□□ -0.79
SMAD4-209ENST00000589941 LACTBP83111 547 aaPredicted RBP10.12□□□□□ -0.79
SMAD4-209ENST00000589941 DIS3LQ8TF46 1054 aaKnown RBP10.12□□□□□ -0.79
SMAD4-209ENST00000589941 SPACA7Q96KW9 195 aa10.12□□□□□ -0.79
SMAD4-209ENST00000589941 ZC3H12CQ9C0D7 883 aaKnown RBP10.12□□□□□ -0.79
SMAD4-209ENST00000589941 TRMT112Q9UI30 125 aaKnown RBP10.12□□□□□ -0.79
SMAD4-209ENST00000589941 TRIM33Q9UPN9 1127 aa10.12□□□□□ -0.79
SMAD4-209ENST00000589941 GJB1P08034 283 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 SYN1P17600 705 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 BMP8BP34820 402 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 MAGEA10P43363 369 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-209ENST00000589941 DACT2Q5SW24 774 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 GDF6Q6KF10 455 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-209ENST00000589941 APOBEC3FQ8IUX4 373 aaKnown RBP10.11□□□□□ -0.79
SMAD4-209ENST00000589941 C7orf61Q8IZ16 206 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 U2AF1L4Q8WU68 220 aaKnown RBP10.11□□□□□ -0.79
SMAD4-209ENST00000589941 PMEPA1Q969W9 287 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 ZBED3Q96IU2 234 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-209ENST00000589941 HHIPQ96QV1 700 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 RBSNQ9H1K0 784 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 LATS2Q9NRM7 1088 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 PODXL2Q9NZ53 605 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 BDP1A6H8Y1 2624 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 DOCK3Q8IZD9 2030 aa10.11□□□□□ -0.79
SMAD4-209ENST00000589941 FAM229AH3BQW9 127 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 EIF4A1P60842 406 aaKnown RBP10.1□□□□□ -0.79
SMAD4-209ENST00000589941 CEP135Q66GS9 1140 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 OTUD7BQ6GQQ9 843 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 SND1Q7KZF4 910 aaKnown RBP eCLIP10.1□□□□□ -0.79
SMAD4-209ENST00000589941 DMRTC2Q8IXT2 367 aaPredicted RBP10.1□□□□□ -0.79
SMAD4-209ENST00000589941 TDHQ8IZJ6 230 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 OPTNQ96CV9 577 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 FAM122AQ96E09 287 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 DMRTB1Q96MA1 342 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 PBX4Q9BYU1 374 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 RNF208Q9H0X6 261 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 SUPT16HQ9Y5B9 1047 aaKnown RBP10.1□□□□□ -0.79
SMAD4-209ENST00000589941 REV3LO60673 3130 aa10.1□□□□□ -0.79
SMAD4-209ENST00000589941 CCL15-CCL14A0A0B4J2E2 113 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 CCL15Q16663 113 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 NBPF12Q5TAG4 269 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-209ENST00000589941 PEAR1Q5VY43 1037 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-209ENST00000589941 ALKBH8Q96BT7 664 aaKnown RBP10.09□□□□□ -0.79
SMAD4-209ENST00000589941 DEFB129Q9H1M3 183 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 SEC31BQ9NQW1 1179 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 DZANK1Q9NVP4 752 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 RIPOR2Q9Y4F9 1068 aa10.09□□□□□ -0.79
SMAD4-209ENST00000589941 TMEM265A0A087WTH1 108 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 PIK3R2O00459 728 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 GDF11O95390 407 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 GRK4P32298 578 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 DSC3Q14574 896 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 SF3B3Q15393 1217 aaKnown RBP10.08□□□□□ -0.8
SMAD4-209ENST00000589941 FAM89AQ96GI7 184 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 POP1Q99575 1024 aaKnown RBP10.08□□□□□ -0.8
SMAD4-209ENST00000589941 GZF1Q9H116 711 aaPredicted RBP10.08□□□□□ -0.8
SMAD4-209ENST00000589941 NOP53Q9NZM5 478 aaKnown RBP10.08□□□□□ -0.8
SMAD4-209ENST00000589941 SRRDQ9UH36 339 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 KNSTRNQ9Y448 316 aa10.08□□□□□ -0.8
SMAD4-209ENST00000589941 PTPRFP10586 1907 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 USP2O75604 605 aaPredicted RBP10.07□□□□□ -0.8
SMAD4-209ENST00000589941 TAF7Q15545 349 aaPredicted RBP10.07□□□□□ -0.8
SMAD4-209ENST00000589941 KIAA0825Q8IV33 1275 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 MAFAQ8NHW3 353 aaPredicted RBP10.07□□□□□ -0.8
SMAD4-209ENST00000589941 OSMRQ99650 979 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 ZKSCAN3Q9BRR0 538 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 LACRTQ9GZZ8 138 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 MYPNQ86TC9 1320 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 ADGRA2Q96PE1 1338 aa10.07□□□□□ -0.8
SMAD4-209ENST00000589941 MED23Q9ULK4 1368 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 PLXNB2O15031 1838 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 A0A0A0MRY4 1105 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 CLRN2A0PK11 232 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 KRBA1A5PL33 1030 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 EIF1AYO14602 144 aaKnown RBP10.06□□□□□ -0.8
SMAD4-209ENST00000589941 TREHO43280 583 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 TLR2O60603 784 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 EDN3P14138 238 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 RPS8P62241 208 aaKnown RBP10.06□□□□□ -0.8
SMAD4-209ENST00000589941 AIMP1Q12904 312 aaKnown RBP10.06□□□□□ -0.8
SMAD4-209ENST00000589941 ARHGEF6Q15052 776 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 GALNT12Q8IXK2 581 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 TMEM151AQ8N4L1 468 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 IL22RA1Q8N6P7 574 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 XAGE3Q8WTP9 111 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 RTF1Q92541 710 aaKnown RBP10.06□□□□□ -0.8
SMAD4-209ENST00000589941 PAWRQ96IZ0 340 aaKnown RBP10.06□□□□□ -0.8
SMAD4-209ENST00000589941 ZNF804BA4D1E1 1349 aa10.06□□□□□ -0.8
SMAD4-209ENST00000589941 CPNE3O75131 537 aaKnown RBP10.05□□□□□ -0.8
SMAD4-209ENST00000589941 SMNDC1O75940 238 aaKnown RBP eCLIP10.05□□□□□ -0.8
SMAD4-209ENST00000589941 SGPL1O95470 568 aa10.05□□□□□ -0.8
SMAD4-209ENST00000589941 KLRK1P26718 216 aa10.05□□□□□ -0.8
SMAD4-209ENST00000589941 PSMC4P43686 418 aa10.05□□□□□ -0.8
SMAD4-209ENST00000589941 PRKCZQ05513 592 aa10.05□□□□□ -0.8
SMAD4-209ENST00000589941 CC2D1BQ5T0F9 858 aaKnown RBP10.05□□□□□ -0.8
SMAD4-209ENST00000589941 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms