RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 WDR70Q9NW82 654 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 SAGE1Q9NXZ1 904 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 BTBD7Q9P203 1132 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 ADAMTS5Q9UNA0 930 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 KCNJ14Q9UNX9 436 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 ATP6V1DQ9Y5K8 247 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 ALDH1A1P00352 501 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 MMP1P03956 469 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 HSPA8P11142 646 aaKnown RBP12.04□□□□□ -0.48
VPS4B-204ENST00000589604 SCG2P13521 617 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 TAL1P17542 331 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-204ENST00000589604 OSBPP22059 807 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 CTGFP29279 349 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 GSE1Q14687 1217 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 COG2Q14746 738 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 CCDC96Q2M329 555 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 Q3C1V9 767 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 REPS2Q8NFH8 660 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 PARK7Q99497 189 aaKnown RBP12.04□□□□□ -0.48
VPS4B-204ENST00000589604 PHF20Q9BVI0 1012 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 UBA5Q9GZZ9 404 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 ZFYVE28Q9HCC9 887 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 PPP1R9AQ9ULJ8 1098 aa12.04□□□□□ -0.48
VPS4B-204ENST00000589604 ADAMTS3O15072 1205 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 PRPF40AO75400 957 aaKnown RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 PABPC4Q13310 644 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 TYW1BQ6NUM6 668 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 BTNL9Q6UXG8 535 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 LBX2Q6XYB7 198 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 ANKRD13CQ8N6S4 541 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 KIFC2Q96AC6 838 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 MTMR8Q96EF0 704 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 SLF1Q9BQI6 1058 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 ANP32EQ9BTT0 268 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 VPS54Q9P1Q0 977 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 TFIP11Q9UBB9 837 aaKnown RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 BTBD18B2RXH4 712 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 GPR25O00155 361 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 VWA5AO00534 786 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 AKAP17AQ02040 695 aaKnown RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 TMEM132BQ14DG7 1078 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 OXER1Q8TDS5 423 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 SMCR8Q8TEV9 937 aaPredicted RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 PIBF1Q8WXW3 757 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 PAGR1Q9BTK6 254 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 ARHGAP39Q9C0H5 1083 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 RBM27Q9P2N5 1060 aaKnown RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 FEM1BQ9UK73 627 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 PRR12Q9ULL5 1215 aa12.03□□□□□ -0.48
VPS4B-204ENST00000589604 ISY1Q9ULR0 285 aaKnown RBP12.03□□□□□ -0.48
VPS4B-204ENST00000589604 CENPFP49454 3210 aa12.02□□□□□ -0.48
VPS4B-204ENST00000589604 ZNF536O15090 1300 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 STXBP3O00186 592 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 PLA2G6O60733 806 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 GADD45BO75293 160 aaPredicted RBP12.02□□□□□ -0.49
VPS4B-204ENST00000589604 STAT2P52630 851 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 GPATCH4Q5T3I0 446 aaKnown RBP12.02□□□□□ -0.49
VPS4B-204ENST00000589604 WWC2Q6AWC2 1192 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 BRAPQ7Z569 592 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 ZNF296Q8WUU4 475 aaPredicted RBP12.02□□□□□ -0.49
VPS4B-204ENST00000589604 TNFRSF25Q93038 417 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 FTOQ9C0B1 505 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS4B-204ENST00000589604 JMJD4Q9H9V9 463 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 SH3GLB2Q9NR46 395 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 HOXC10Q9NYD6 342 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 MORF4L1Q9UBU8 362 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 PNMA3Q9UL41 463 aa12.02□□□□□ -0.49
VPS4B-204ENST00000589604 MYPNQ86TC9 1320 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 GOLGA6L22H0YM25 854 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 TRAK2O60296 914 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 LBX1P52954 281 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 KRT85P78386 507 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 NR5A1Q13285 461 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 TRIM29Q14134 588 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 SYDE2Q5VT97 1194 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 MYSM1Q5VVJ2 828 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 DIS3L2Q8IYB7 885 aaKnown RBP12.01□□□□□ -0.49
VPS4B-204ENST00000589604 ADGRF4Q8IZF3 695 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 PRPF38AQ8NAV1 312 aaKnown RBP12.01□□□□□ -0.49
VPS4B-204ENST00000589604 GPT2Q8TD30 523 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 GPKOWQ92917 476 aaPredicted RBP eCLIP12.01□□□□□ -0.49
VPS4B-204ENST00000589604 USP28Q96RU2 1077 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 PIGSQ96S52 555 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 BEGAINQ9BUH8 593 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 PORCNQ9H237 461 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 FOXP1Q9H334 677 aaPredicted RBP12.01□□□□□ -0.49
VPS4B-204ENST00000589604 ZNF214Q9UL59 606 aaPredicted RBP12.01□□□□□ -0.49
VPS4B-204ENST00000589604 CASP8AP2Q9UKL3 1982 aa12.01□□□□□ -0.49
VPS4B-204ENST00000589604 M0R2N6 131 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 FIBPO43427 364 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 PPP1R11O60927 126 aaPredicted RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 GCLCP48506 637 aaPredicted RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 ERVK-9P63128 1117 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 ERVK-24P63145 666 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 IKQ13123 557 aaPredicted RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 ATL3Q6DD88 541 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 LEO1Q8WVC0 666 aaPredicted RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 SLC38A10Q9HBR0 1119 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 VAT1LQ9HCJ6 419 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 BARHL2Q9NY43 387 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms