RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 ZBED4O75132 1171 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 TOMM70O94826 608 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 GNA11P29992 359 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 HOXA7P31268 230 aaPredicted RBP12.96□□□□□ -0.33
VMP1-207ENST00000588131 TOB1P50616 345 aaPredicted RBP12.96□□□□□ -0.33
VMP1-207ENST00000588131 KRT85P78386 507 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 NBR1Q14596 966 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 UBE2SQ16763 222 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 POTEEQ6S8J3 1075 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 PIK3AP1Q6ZUJ8 805 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 FASTKD5Q7L8L6 764 aaKnown RBP12.96□□□□□ -0.33
VMP1-207ENST00000588131 SAPCD2Q86UD0 394 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 RASAL3Q86YV0 1011 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 CPXCR1Q8N123 301 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 ZNF396Q96N95 335 aaPredicted RBP12.96□□□□□ -0.33
VMP1-207ENST00000588131 BIN2Q9UBW5 565 aaPredicted RBP12.96□□□□□ -0.33
VMP1-207ENST00000588131 CCPG1Q9ULG6 757 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 ABCB11O95342 1321 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 WNT7AO00755 349 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 CLK2P49760 499 aaKnown RBP12.95□□□□□ -0.34
VMP1-207ENST00000588131 GTF2A2P52657 109 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 CEBPZQ03701 1054 aaKnown RBP12.95□□□□□ -0.34
VMP1-207ENST00000588131 JAKMIP3Q5VZ66 844 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 REXO1Q8N1G1 1221 aaKnown RBP12.95□□□□□ -0.34
VMP1-207ENST00000588131 BRI3BPQ8WY22 251 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 CUL5Q93034 780 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 PGBD1Q96JS3 809 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 P2RX7Q99572 595 aaKnown RBP12.95□□□□□ -0.34
VMP1-207ENST00000588131 ASCC2Q9H1I8 757 aaPredicted RBP12.95□□□□□ -0.34
VMP1-207ENST00000588131 PSTPIP2Q9H939 334 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 CLIC4Q9Y696 253 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 TLL2Q9Y6L7 1015 aa12.95□□□□□ -0.34
VMP1-207ENST00000588131 RBBP6Q7Z6E9 1792 aaKnown RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 CCL15-CCL14A0A0B4J2E2 113 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 MEIS2O14770 477 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 PEX10O60683 326 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ZBTB48P10074 688 aaPredicted RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 FDX1P10109 184 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 CETPP11597 493 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ALAS1P13196 640 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ATP2B1P20020 1258 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ZNF157P51786 506 aaPredicted RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 MRPL12P52815 198 aaKnown RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 IRX3P78415 501 aaPredicted RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 TRAF1Q13077 416 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 TMEM132BQ14DG7 1078 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 CCL15Q16663 113 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ATL3Q6DD88 541 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 RGMBQ6NW40 437 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 USP17L6PQ6QN14 398 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 KRT25Q7Z3Z0 450 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 TMEM87AQ8NBN3 555 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 BICD2Q8TD16 824 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 CLEC4DQ8WXI8 215 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 TBC1D5Q92609 795 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 LMBRD1Q9NUN5 540 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 HOXC10Q9NYD6 342 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 RTEL1Q9NZ71 1219 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 ZNF214Q9UL59 606 aaPredicted RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 MRPL11Q9Y3B7 192 aaKnown RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 RIPK3Q9Y572 518 aa12.94□□□□□ -0.34
VMP1-207ENST00000588131 CTDP1Q9Y5B0 961 aaPredicted RBP12.94□□□□□ -0.34
VMP1-207ENST00000588131 CCDC194A0A1B0GVG4 234 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 NFIBO00712 420 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 PRPF40AO75400 957 aaKnown RBP12.93□□□□□ -0.34
VMP1-207ENST00000588131 CNMDO75829 334 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 NASPP49321 788 aaPredicted RBP12.93□□□□□ -0.34
VMP1-207ENST00000588131 OAZ1P54368 228 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 C1QTNF8P60827 252 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 SF3A1Q15459 793 aaKnown RBP12.93□□□□□ -0.34
VMP1-207ENST00000588131 INF2Q27J81 1249 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 RILPL1Q5EBL4 403 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 MUM1L1Q5H9M0 696 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 ANO1Q5XXA6 986 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 LEO1Q8WVC0 666 aaPredicted RBP12.93□□□□□ -0.34
VMP1-207ENST00000588131 SPATA32Q96LK8 384 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 POLR3EQ9NVU0 708 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 BTBD7Q9P203 1132 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 CFAP45Q9UL16 551 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 NOL7Q9UMY1 257 aaKnown RBP12.93□□□□□ -0.34
VMP1-207ENST00000588131 PCDHB6Q9Y5E3 794 aa12.93□□□□□ -0.34
VMP1-207ENST00000588131 TMEM88BA6NKF7 163 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 DDX11L8A8MPP1 907 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 BTBD19C9JJ37 291 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 GOLGA6L22H0YM25 854 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 GADD45BO75293 160 aaPredicted RBP12.92□□□□□ -0.34
VMP1-207ENST00000588131 SLC10A3P09131 477 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 OSBPP22059 807 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 HOXA13P31271 388 aaPredicted RBP12.92□□□□□ -0.34
VMP1-207ENST00000588131 HERVK_113P62684 666 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 FSTL1Q12841 308 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 PABPC4Q13310 644 aaKnown RBP eCLIP12.92□□□□□ -0.34
VMP1-207ENST00000588131 NONOQ15233 471 aaKnown RBP eCLIP12.92□□□□□ -0.34
VMP1-207ENST00000588131 PTPAQ15257 358 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 TTC38Q5R3I4 469 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 SNRNP48Q6IEG0 339 aaKnown RBP12.92□□□□□ -0.34
VMP1-207ENST00000588131 LBX2Q6XYB7 198 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 ANKRD23Q86SG2 305 aa12.92□□□□□ -0.34
VMP1-207ENST00000588131 FAM43AQ8N2R8 423 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms