RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 DDX49Q9Y6V7 483 aaKnown RBP13.21□□□□□ -0.29
VPS4B-202ENST00000588059 COL4A4P53420 1690 aaPredicted RBP13.21□□□□□ -0.3
VPS4B-202ENST00000588059 SOWAHBA6NEL2 793 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 ZBBXA8MT70 800 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 RFXAPO00287 272 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 SMPD1P17405 629 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 POU3F3P20264 500 aaPredicted RBP13.2□□□□□ -0.3
VPS4B-202ENST00000588059 PSMC6P62333 389 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 TTLL4Q14679 1199 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 SKIV2LQ15477 1246 aaKnown RBP13.2□□□□□ -0.3
VPS4B-202ENST00000588059 RPUSD2Q8IZ73 545 aaKnown RBP13.2□□□□□ -0.3
VPS4B-202ENST00000588059 LRRC47Q8N1G4 583 aaKnown RBP13.2□□□□□ -0.3
VPS4B-202ENST00000588059 CEP95Q96GE4 821 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 STRBPQ96SI9 672 aaKnown RBP13.2□□□□□ -0.3
VPS4B-202ENST00000588059 LRFN3Q9BTN0 628 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 AP5M1Q9H0R1 490 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 ACAD9Q9H845 621 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 MKNK2Q9HBH9 465 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 MTCH2Q9Y6C9 303 aa13.2□□□□□ -0.3
VPS4B-202ENST00000588059 EPOPA6NHQ4 379 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 ASB14A6NK59 587 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 GSG1L2A8MUP6 293 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 DYNC1LI2O43237 492 aaPredicted RBP13.19□□□□□ -0.3
VPS4B-202ENST00000588059 CA3P07451 260 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 SIRT2Q8IXJ6 389 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 GMCL1P1Q8NEA9 526 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 MKL1Q969V6 931 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 ALDH8A1Q9H2A2 487 aaPredicted RBP13.19□□□□□ -0.3
VPS4B-202ENST00000588059 EPHX3Q9H6B9 360 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 PDGFCQ9NRA1 345 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 RNF146Q9NTX7 359 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 SYNPO2Q9UMS6 1093 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 ARIH1Q9Y4X5 557 aaPredicted RBP13.19□□□□□ -0.3
VPS4B-202ENST00000588059 PTPRSQ13332 1948 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 PLIN4Q96Q06 1357 aa13.19□□□□□ -0.3
VPS4B-202ENST00000588059 ZNF536O15090 1300 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 SCN10AQ9Y5Y9 1956 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 MINDY4BA8MYZ0 360 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 GTPBP6O43824 516 aaPredicted RBP13.18□□□□□ -0.3
VPS4B-202ENST00000588059 ZEB2O60315 1214 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 RAB11FIP3O75154 756 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 PFKMP08237 780 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 TMEM67Q5HYA8 995 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 TMEM63BQ5T3F8 832 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 KRT40Q6A162 431 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 ZSCAN25Q6NSZ9 544 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 TAPT1Q6NXT6 567 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 GIMAP6Q6P9H5 292 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 FBXO16Q8IX29 292 aaPredicted RBP13.18□□□□□ -0.3
VPS4B-202ENST00000588059 RPAP2Q8IXW5 612 aaPredicted RBP13.18□□□□□ -0.3
VPS4B-202ENST00000588059 CERS4Q9HA82 394 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 EPB41L4AQ9HCS5 686 aaPredicted RBP13.18□□□□□ -0.3
VPS4B-202ENST00000588059 MTMR4Q9NYA4 1195 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 COG6Q9Y2V7 657 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 HCN4Q9Y3Q4 1203 aa13.18□□□□□ -0.3
VPS4B-202ENST00000588059 BRWD1Q9NSI6 2320 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 TMEM232C9JQI7 657 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 HMMRO75330 724 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 PRDM1O75626 825 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 ARHGEF15O94989 841 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 TTLL1O95922 423 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 FDX1P10109 184 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 CYP2C9P11712 490 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 BMP3P12645 472 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 STAT2P52630 851 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 SLFN13Q68D06 897 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 EEPD1Q7L9B9 569 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 TET1Q8NFU7 2136 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 TRMT13Q9NUP7 481 aaKnown RBP13.17□□□□□ -0.3
VPS4B-202ENST00000588059 COG5Q9UP83 839 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 Q9Y3F1 56 aa13.17□□□□□ -0.3
VPS4B-202ENST00000588059 TNKSO95271 1327 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 TLL1O43897 1013 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 TAP1Q03518 808 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 TKFCQ3LXA3 575 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 TMEM31Q5JXX7 168 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 IQSEC1Q6DN90 963 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 DEFB128Q7Z7B8 93 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 TRERF1Q96PN7 1200 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 SLC9A7Q96T83 725 aa13.16□□□□□ -0.3
VPS4B-202ENST00000588059 ALAS1P13196 640 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 MUM1L1Q5H9M0 696 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 FAM160B2Q86V87 743 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 ZNF444Q8N0Y2 327 aaPredicted RBP13.15□□□□□ -0.3
VPS4B-202ENST00000588059 MORC4Q8TE76 937 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 KHSRPQ92945 711 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS4B-202ENST00000588059 OSBP2Q969R2 916 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 GMCL1Q96IK5 515 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 VTA1Q9NP79 307 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 C11orf16Q9NQ32 467 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 CYP39A1Q9NYL5 469 aa13.15□□□□□ -0.3
VPS4B-202ENST00000588059 ISY1Q9ULR0 285 aaKnown RBP13.15□□□□□ -0.3
VPS4B-202ENST00000588059 SUPT20HL2P0C7V6 817 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 ACTN1P12814 892 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 TDO2P48775 406 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 PURAQ00577 322 aaKnown RBP13.14□□□□□ -0.31
VPS4B-202ENST00000588059 DUSP28Q4G0W2 176 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 KIAA1211Q6ZU35 1233 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 NEDD1Q8NHV4 660 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 CHURC1Q8WUH1 139 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms