RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 PLIN4Q96Q06 1357 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 GBF1Q92538 1859 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 A0A0U1RQG5 324 aaPredicted RBP13.8□□□□□ -0.2
LIG3-207ENST00000586119 RBAK-RBAKDNI3L0D1 243 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 DYNC1LI2O43237 492 aaPredicted RBP13.8□□□□□ -0.2
LIG3-207ENST00000586119 CD4P01730 458 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 STAT2P52630 851 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 IKQ13123 557 aaPredicted RBP13.8□□□□□ -0.2
LIG3-207ENST00000586119 RCSD1Q6JBY9 416 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 CHURC1Q8WUH1 139 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 PBX4Q9BYU1 374 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 NACAP1Q9BZK3 213 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 ZNF287Q9HBT7 754 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 CXXC1Q9P0U4 656 aaPredicted RBP13.8□□□□□ -0.2
LIG3-207ENST00000586119 PRR12Q9ULL5 1215 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 STX8Q9UNK0 236 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
LIG3-207ENST00000586119 SLC16A2P36021 539 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 PSMC6P62333 389 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 NKX3-2P78367 333 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 RASIP1Q5U651 963 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 TAPT1Q6NXT6 567 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 FAM160B2Q86V87 743 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 FBXO16Q8IX29 292 aaPredicted RBP13.79□□□□□ -0.2
LIG3-207ENST00000586119 PPP1R13LQ8WUF5 828 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 PPM1EQ8WY54 764 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 TIFAQ96CG3 184 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 GMCL1Q96IK5 515 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 TRPV6Q9H1D0 765 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 SPC25Q9HBM1 224 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 SYNPO2Q9UMS6 1093 aa13.79□□□□□ -0.2
LIG3-207ENST00000586119 TSPY2A6NKD2 308 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 RANBP6O60518 1105 aaKnown RBP13.78□□□□□ -0.2
LIG3-207ENST00000586119 CCL23P55773 120 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 PPIGQ13427 754 aaKnown RBP eCLIP13.78□□□□□ -0.24e-7■■■□□ 15.4
LIG3-207ENST00000586119 TLK2Q86UE8 772 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 SLC43A3Q8NBI5 491 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 VWCEQ96DN2 955 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 CYP39A1Q9NYL5 469 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 SALL3Q9BXA9 1300 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 LRRC37A2A6NM11 1700 aa13.78□□□□□ -0.2
LIG3-207ENST00000586119 TMEM265A0A087WTH1 108 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 ERC2O15083 957 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 SLC3A2P08195 630 aaKnown RBP13.77□□□□□ -0.21
LIG3-207ENST00000586119 FDX1P10109 184 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 MX1P20591 662 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 ITGA7Q13683 1181 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 MROH7Q68CQ1 1323 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 FRMPD2Q68DX3 1309 aaPredicted RBP13.77□□□□□ -0.21
LIG3-207ENST00000586119 NSMFQ6X4W1 530 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 TMEM199Q8N511 208 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 PRDM12Q9H4Q4 367 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 GPCPD1Q9NPB8 672 aa13.77□□□□□ -0.21
LIG3-207ENST00000586119 SCN5AQ14524 2016 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 SPTBN5Q9NRC6 3674 aaKnown RBP13.76□□□□□ -0.21
LIG3-207ENST00000586119 ASB14A6NK59 587 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 TLR3O15455 904 aaKnown RBP13.76□□□□□ -0.21
LIG3-207ENST00000586119 B4GALT4O60513 344 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 PLA2G6O60733 806 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 NOVP48745 357 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 BAATQ14032 418 aaPredicted RBP13.76□□□□□ -0.21
LIG3-207ENST00000586119 ADGRE1Q14246 886 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 FSCN1Q16658 493 aaKnown RBP13.76□□□□□ -0.21
LIG3-207ENST00000586119 CCDC96Q2M329 555 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 LRRFIP1Q32MZ4 808 aaKnown RBP13.76□□□□□ -0.21
LIG3-207ENST00000586119 TKFCQ3LXA3 575 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 ANKRD45Q5TZF3 282 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 KIAA1211Q6ZU35 1233 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 OTOP2Q7RTS6 562 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 FAM227BQ96M60 508 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 AP5M1Q9H0R1 490 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 IL23AQ9NPF7 189 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 CCPG1Q9ULG6 757 aa13.76□□□□□ -0.21
LIG3-207ENST00000586119 NFIBO00712 420 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 MYOGP15173 224 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 RABGGTBP53611 331 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 CCDC85BQ15834 202 aaPredicted RBP13.75□□□□□ -0.21
LIG3-207ENST00000586119 RRP12Q5JTH9 1297 aaKnown RBP13.75□□□□□ -0.21
LIG3-207ENST00000586119 IQSEC1Q6DN90 963 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 HERVK_113Q902F9 699 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 SCLYQ96I15 445 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 TMEM47Q9BQJ4 181 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 WNT8AQ9H1J5 351 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 NKX2-4Q9H2Z4 354 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 HIPK3Q9H422 1215 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 ANAPC4Q9UJX5 808 aa13.75□□□□□ -0.21
LIG3-207ENST00000586119 YBX2Q9Y2T7 364 aaKnown RBP13.75□□□□□ -0.21
LIG3-207ENST00000586119 A0A0D9SFI3 127 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 FGAP02671 866 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 FGBP02675 491 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 FGRP09769 529 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 HAND2P61296 217 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 NOC4LQ9BVI4 516 aaKnown RBP13.74□□□□□ -0.21
LIG3-207ENST00000586119 RANBP17Q9H2T7 1088 aaKnown RBP13.74□□□□□ -0.21
LIG3-207ENST00000586119 TOMM22Q9NS69 142 aa13.74□□□□□ -0.21
LIG3-207ENST00000586119 TRIP12Q14669 1992 aaPredicted RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 TCF20Q9UGU0 1960 aaKnown RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 ORC4O43929 436 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 ICAM1P05362 532 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 CYP2C9P11712 490 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms