RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 MARCH6O60337 910 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 PPP6R2O75170 966 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 ATP2B1P20020 1258 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 SLC16A2P36021 539 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 ECE1P42892 770 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 NASPP49321 788 aaPredicted RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 MTMR2Q13614 643 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 TMEM266Q2M3C6 531 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 NOL9Q5SY16 702 aaKnown RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 L1TD1Q5T7N2 865 aaKnown RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 PIK3AP1Q6ZUJ8 805 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 ANKRD13AQ8IZ07 590 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 SPICE1Q8N0Z3 855 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 KRI1Q8N9T8 703 aaKnown RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 ZNF280CQ8ND82 737 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 RASSF8Q8NHQ8 419 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 RBM46Q8TBY0 533 aaKnown RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 MRPS27Q92552 414 aaKnown RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 KIFC2Q96AC6 838 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 RAB34Q9BZG1 259 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 KIAA1683Q9H0B3 1180 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 ZMYND12Q9H0C1 365 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 GZF1Q9H116 711 aaPredicted RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 NUP62CLQ9H1M0 184 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 PCDHA1Q9Y5I3 950 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 SSC5DA1L4H1 1573 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 WDR81Q562E7 1941 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ABCB11O95342 1321 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 A0A1W2PQ27 194 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 A0A1W2PQ64 194 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 A0A1W2PQD8 194 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 GOLGA6L3A6NEY3 463 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ADM5C9JUS6 153 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 CTAGE5O15320 804 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 CYTH3O43739 400 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 PLA2G6O60733 806 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 CUTAO60888 179 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ZBED4O75132 1171 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 FLOT1O75955 427 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 INPP5BP32019 993 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 NR5A1Q13285 461 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 PABPC4Q13310 644 aaKnown RBP eCLIP7.05□□□□□ -1.28
LIG3-206ENST00000586058 AP3B2Q13367 1082 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 PRKG1Q13976 671 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 SLC39A14Q15043 492 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 QRICH1Q2TAL8 776 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 USH1GQ495M9 461 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ADALQ6DHV7 355 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 BTNL9Q6UXG8 535 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 RASGRP2Q7LDG7 609 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 NEK8Q86SG6 692 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ZNF710Q8N1W2 664 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 PRPF38AQ8NAV1 312 aaKnown RBP7.05□□□□□ -1.28
LIG3-206ENST00000586058 LINC00301Q8NCQ3 95 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 FERMT2Q96AC1 680 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 KLRG1Q96E93 195 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 CDCA5Q96FF9 252 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 SLF1Q9BQI6 1058 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 WDR18Q9BV38 432 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 TNMDQ9H2S6 317 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 CPVLQ9H3G5 476 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 JMJD4Q9H9V9 463 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 RIC8AQ9NPQ8 531 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 GJB4Q9NTQ9 266 aa7.05□□□□□ -1.28
LIG3-206ENST00000586058 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.05□□□□□ -1.28
LIG3-206ENST00000586058 SCAF8Q9UPN6 1271 aaKnown RBP7.05□□□□□ -1.28
LIG3-206ENST00000586058 MRPL11Q9Y3B7 192 aaKnown RBP7.05□□□□□ -1.28
LIG3-206ENST00000586058 ZNFX1Q9P2E3 1918 aaKnown RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 PHF20L1A8MW92 1017 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 UBE2Q2LH0YL09 131 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 NEMFO60524 1076 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 CCNT1O60563 726 aaKnown RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 FOSP01100 380 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 SLURP2P0DP57 97 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 VEGFAP15692 232 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 GCFC2P16383 781 aaKnown RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 PTPRAP18433 802 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 HIRAP54198 1017 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 BACE1P56817 501 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 MAP3K9P80192 1104 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 FAM160A1Q05DH4 1040 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 SPP2Q13103 211 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 SHROOM1Q2M3G4 852 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 TTBK2Q6IQ55 1244 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 CCDC174Q6PII3 467 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 MCF2L2Q86YR7 1114 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 CCAR1Q8IX12 1150 aaKnown RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 FSIP1Q8NA03 581 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.04□□□□□ -1.28
LIG3-206ENST00000586058 ACER1Q8TDN7 264 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 ZKSCAN4Q969J2 545 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 COA7Q96BR5 231 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 NUP88Q99567 741 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 TAF1DQ9H5J8 278 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 RPAP3Q9H6T3 665 aaPredicted RBP7.04□□□□□ -1.28
LIG3-206ENST00000586058 PSTPIP2Q9H939 334 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 ZNF408Q9H9D4 720 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 PGAP2Q9UHJ9 254 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 ZNF112Q9UJU3 913 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 RCOR1Q9UKL0 485 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms