RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GMCL1Q96IK5 515 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 GMLQ99445 158 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 DISC1Q9NRI5 854 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 IFNKQ9P0W0 207 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 ZNRF3Q9ULT6 936 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 PSMD14O00487 310 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 CCNT1O60563 726 aaKnown RBP12.73□□□□□ -0.37
LIG3-204ENST00000585740 SERPINC1P01008 464 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 KCNA3P22001 575 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 BMP6P22004 513 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 LMOD1P29536 600 aaPredicted RBP12.73□□□□□ -0.37
LIG3-204ENST00000585740 SLC1A4P43007 532 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 AFMP43652 599 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 UBASH3AP57075 661 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 TRAF1Q13077 416 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 LETM2Q2VYF4 491 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 JAKMIP3Q5VZ66 844 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 RRAGBQ5VZM2 374 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 RASGRP2Q7LDG7 609 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 GRAMD1CQ8IYS0 662 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 TBCKQ8TEA7 893 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 CCDC47Q96A33 483 aaKnown RBP12.73□□□□□ -0.37
LIG3-204ENST00000585740 PRMT6Q96LA8 375 aaPredicted RBP12.73□□□□□ -0.37
LIG3-204ENST00000585740 RAB34Q9BZG1 259 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 XPO4Q9C0E2 1151 aaKnown RBP12.73□□□□□ -0.37
LIG3-204ENST00000585740 TMEM60Q9H2L4 133 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 PIM2Q9P1W9 311 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 PCDHAC2Q9Y5I4 1007 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 FER1L6Q2WGJ9 1857 aa12.73□□□□□ -0.37
LIG3-204ENST00000585740 GCFC2P16383 781 aaKnown RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 HOXA7P31268 230 aaPredicted RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 SEPT2Q15019 361 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 TMEM266Q2M3C6 531 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 DALRD3Q5D0E6 543 aaKnown RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 CLEC10AQ8IUN9 316 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 RASSF8Q8NHQ8 419 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 COA7Q96BR5 231 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 NAP1L5Q96NT1 182 aaPredicted RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 CSRNP1Q96S65 589 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIG3-204ENST00000585740 ARHGEF10LQ9HCE6 1279 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 BIN2Q9UBW5 565 aaPredicted RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 ZNF70Q9UC06 446 aaPredicted RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 NRBP1Q9UHY1 535 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 MYH7BA7E2Y1 1941 aa12.72□□□□□ -0.37
LIG3-204ENST00000585740 BRCA1P38398 1863 aaKnown RBP12.72□□□□□ -0.37
LIG3-204ENST00000585740 SLC26A4O43511 780 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 TBC1D12O60347 775 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 RAD17O75943 681 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 CDK11BP21127 795 aaKnown RBP12.71□□□□□ -0.37
LIG3-204ENST00000585740 CLK2P49760 499 aaKnown RBP12.71□□□□□ -0.37
LIG3-204ENST00000585740 AMPD3Q01432 767 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 KCNB1Q14721 858 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 CCDC144BQ3MJ40 725 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 SPATA1Q5VX52 437 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 PPP4R3AQ6IN85 833 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 TTBK2Q6IQ55 1244 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 FAM83AQ86UY5 434 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 CABP7Q86V35 215 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 LRRC8AQ8IWT6 810 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 HSD3B7Q9H2F3 369 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 ZNF277Q9NRM2 450 aaPredicted RBP12.71□□□□□ -0.37
LIG3-204ENST00000585740 FANCLQ9NW38 375 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 PYCARDQ9ULZ3 195 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 NFE2L3Q9Y4A8 694 aa12.71□□□□□ -0.37
LIG3-204ENST00000585740 SYNRGQ9UMZ2 1314 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 USP17L10C9JJH3 530 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 F5H6K3 240 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 RPN1P04843 607 aaKnown RBP12.7□□□□□ -0.38
LIG3-204ENST00000585740 TPM2P07951 284 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 ZNF18P17022 549 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 PPP1R2P41236 205 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 FXR2P51116 673 aaKnown RBP eCLIP12.7□□□□□ -0.382e-6■□□□□ 9.9
LIG3-204ENST00000585740 KLRC3Q07444 240 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 AP3B2Q13367 1082 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 PDIA5Q14554 519 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 KARSQ15046 597 aaKnown RBP12.7□□□□□ -0.38
LIG3-204ENST00000585740 CALCRLQ16602 461 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 QRICH1Q2TAL8 776 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 DNTTIP2Q5QJE6 756 aaKnown RBP12.7□□□□□ -0.38
LIG3-204ENST00000585740 ZNF658Q5TYW1 1059 aaPredicted RBP12.7□□□□□ -0.38
LIG3-204ENST00000585740 BTNL9Q6UXG8 535 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 KCTD1Q719H9 257 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 TMC6Q7Z403 805 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 FILIP1Q7Z7B0 1213 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 CACTINQ8WUQ7 758 aaKnown RBP12.7□□□□□ -0.38
LIG3-204ENST00000585740 CALML4Q96GE6 196 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 CTAGE1Q96RT6 745 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 PSTPIP2Q9H939 334 aa12.7□□□□□ -0.38
LIG3-204ENST00000585740 FAM196BA6NMK8 535 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 GDF11O95390 407 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 SLC34A2O95436 690 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 NDUFB10O96000 172 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 GH2P01242 217 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 BMP3P12645 472 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 SFPQP23246 707 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG3-204ENST00000585740 SLC16A2P36021 539 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 KCNJ6P48051 423 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 TNNI2P48788 182 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms