RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 IKQ13123 557 aaPredicted RBP11.83□□□□□ -0.52
RFFL-208ENST00000581039 SKIV2LQ15477 1246 aaKnown RBP11.83□□□□□ -0.52
RFFL-208ENST00000581039 AAK1Q2M2I8 961 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 TKFCQ3LXA3 575 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 IQSEC1Q6DN90 963 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 LRRC47Q8N1G4 583 aaKnown RBP11.83□□□□□ -0.52
RFFL-208ENST00000581039 AGBL1Q96MI9 1066 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 NOC4LQ9BVI4 516 aaKnown RBP11.83□□□□□ -0.52
RFFL-208ENST00000581039 C1QTNF1Q9BXJ1 281 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 LRRCC1Q9C099 1032 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 A1CFQ9NQ94 594 aaKnown RBP11.83□□□□□ -0.52
RFFL-208ENST00000581039 RNF146Q9NTX7 359 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 Q9Y3F1 56 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 PCDHA11Q9Y5I1 949 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 ASTN1O14525 1302 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 RNF113AO15541 343 aaKnown RBP11.82□□□□□ -0.52
RFFL-208ENST00000581039 B4GALT4O60513 344 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 TSPY3P0CV98 308 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 TSPY8P0CW00 308 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 BMP1P13497 986 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 MYOGP15173 224 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 GNAT2P19087 354 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 PLA2G5P39877 138 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 STAT2P52630 851 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 PSMC6P62333 389 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 FAM160B2Q86V87 743 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 STAG1Q8WVM7 1258 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 APPBP2Q92624 585 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 OSBP2Q969R2 916 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 TRERF1Q96PN7 1200 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 ECHDC1Q9NTX5 307 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 GRIN2DO15399 1336 aa11.82□□□□□ -0.52
RFFL-208ENST00000581039 BDP1A6H8Y1 2624 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 PATL2C9JE40 543 aaKnown RBP11.81□□□□□ -0.52
RFFL-208ENST00000581039 GTPBP6O43824 516 aaPredicted RBP11.81□□□□□ -0.52
RFFL-208ENST00000581039 SLC3A2P08195 630 aaKnown RBP11.81□□□□□ -0.52
RFFL-208ENST00000581039 SUPT20HL2P0C7V6 817 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 ALAS1P13196 640 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 ATP2A2P16615 1042 aaKnown RBP11.81□□□□□ -0.52
RFFL-208ENST00000581039 SLC1A4P43007 532 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 TFAP4Q01664 338 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 PDE4BQ07343 736 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 TMEM67Q5HYA8 995 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 KIAA1211Q6ZU35 1233 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 EEPD1Q7L9B9 569 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 KBTBD3Q8NAB2 608 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 NEDD1Q8NHV4 660 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 CHMP4CQ96CF2 233 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 SCLYQ96I15 445 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 NECAB3Q96P71 396 aaPredicted RBP11.81□□□□□ -0.52
RFFL-208ENST00000581039 NACAP1Q9BZK3 213 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 WNT8AQ9H1J5 351 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 PDGFCQ9NRA1 345 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 ZNF536O15090 1300 aa11.81□□□□□ -0.52
RFFL-208ENST00000581039 GPAA1O43292 621 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 SMARCA5O60264 1052 aaPredicted RBP11.8□□□□□ -0.52
RFFL-208ENST00000581039 ZFYP08048 801 aaPredicted RBP11.8□□□□□ -0.52
RFFL-208ENST00000581039 PFKMP08237 780 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 PTGS1P23219 599 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 MCCP23508 829 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 TFF2Q03403 129 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 TAPT1Q6NXT6 567 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 IFNL3Q8IZI9 196 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 GMCL1Q96IK5 515 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 ALDH8A1Q9H2A2 487 aaPredicted RBP11.8□□□□□ -0.52
RFFL-208ENST00000581039 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
RFFL-208ENST00000581039 VTA1Q9NP79 307 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 CHD9Q3L8U1 2897 aa11.8□□□□□ -0.52
RFFL-208ENST00000581039 ERC2O15083 957 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 PLA2G6O60733 806 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 ACTN1P12814 892 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 POU3F3P20264 500 aaPredicted RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 KCNQ1P51787 676 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 TTLL4Q14679 1199 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 LRRFIP1Q32MZ4 808 aaKnown RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 PPP4R3BQ5MIZ7 849 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 NSMFQ6X4W1 530 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 DEFB128Q7Z7B8 93 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 FBXO16Q8IX29 292 aaPredicted RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 GPATCH3Q96I76 525 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 GPHNQ9NQX3 736 aaPredicted RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 TRMT13Q9NUP7 481 aaKnown RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 POLR3EQ9NVU0 708 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 CYP39A1Q9NYL5 469 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 DDX49Q9Y6V7 483 aaKnown RBP11.79□□□□□ -0.52
RFFL-208ENST00000581039 MCM3APO60318 1980 aa11.79□□□□□ -0.52
RFFL-208ENST00000581039 GREB1LQ9C091 1923 aaPredicted RBP11.78□□□□□ -0.52
RFFL-208ENST00000581039 M0R2C6 588 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 RFXAPO00287 272 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 CA3P07451 260 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 CYP2C9P11712 490 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 SNAP25P60880 206 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 DUSP28Q4G0W2 176 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 MUM1L1Q5H9M0 696 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 TMEM63BQ5T3F8 832 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 KCTD1Q719H9 257 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 RETREG2Q8NC44 543 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 VWCEQ96DN2 955 aa11.78□□□□□ -0.52
RFFL-208ENST00000581039 CERS4Q9HA82 394 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms