RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 CHGBP05060 677 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 SMPD1P17405 629 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 NHLH1Q02575 133 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 ITPRIPQ8IWB1 547 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 FTSJ3Q8IY81 847 aaKnown RBP11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 PPP1R13LQ8WUF5 828 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 UIMC1Q96RL1 719 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 DNAJC2Q99543 621 aaKnown RBP11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 ALDH8A1Q9H2A2 487 aaPredicted RBP11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 PDGFCQ9NRA1 345 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 HOMER2Q9NSB8 354 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 LCHNA4D1U4 455 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 SOWAHBA6NEL2 793 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 USP17L12C9JPN9 530 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 USP17L21D6R901 530 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 GOLIM4O00461 696 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 ATP2A1O14983 1001 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 DYNC1LI2O43237 492 aaPredicted RBP11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 PFKMP08237 780 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 TMCO2Q7Z6W1 182 aaPredicted RBP11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 HERC6Q8IVU3 1022 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 FBXO16Q8IX29 292 aaPredicted RBP11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 KIFC2Q96AC6 838 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 SLC9A7Q96T83 725 aa11.15□□□□□ -0.62
SMARCD2-208ENST00000580054 TNKSO95271 1327 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 F5H6K3 240 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 IL9P15248 144 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 KLRC3Q07444 240 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 TTF1Q15361 905 aaPredicted RBP11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 EEPD1Q7L9B9 569 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 FAM178BQ8IXR5 827 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 GJD3Q8N144 294 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 STK11IPQ8N1F8 1099 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 FAM133AQ8N9E0 248 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 PRPF38AQ8NAV1 312 aaKnown RBP11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 ANKS1AQ92625 1134 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 FBXL18Q96ME1 805 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 AP5M1Q9H0R1 490 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 UBE2ZQ9H832 354 aaPredicted RBP11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 SLC38A10Q9HBR0 1119 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 IL1RAPL2Q9NP60 686 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 A1CFQ9NQ94 594 aaKnown RBP11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 EXOC6BQ9Y2D4 811 aa11.14□□□□□ -0.63
SMARCD2-208ENST00000580054 ZBED4O75132 1171 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 RLBP1P12271 317 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 SSTR3P32745 418 aaPredicted RBP11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 CEP85Q6P2H3 762 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 ERC1Q8IUD2 1116 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 CHST13Q8NET6 341 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 ATP8A2Q9NTI2 1148 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 FBXO40Q9UH90 709 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 MTUS1Q9ULD2 1270 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 CTDP1Q9Y5B0 961 aaPredicted RBP11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 ATG2AQ2TAZ0 1938 aa11.13□□□□□ -0.63
SMARCD2-208ENST00000580054 MYO7AQ13402 2215 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 ZEB2O60315 1214 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 ACTN1P12814 892 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 RASA1P20936 1047 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 KCNA5P22460 613 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 ADD2P35612 726 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 TAPT1Q6NXT6 567 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 CTR9Q6PD62 1173 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 LRRC47Q8N1G4 583 aaKnown RBP11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 PHOSPHO2Q8TCD6 241 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 FTOQ9C0B1 505 aaKnown RBP eCLIP11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 ACAD9Q9H845 621 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 RNF146Q9NTX7 359 aa11.12□□□□□ -0.63
SMARCD2-208ENST00000580054 ZDBF2Q9HCK1 2354 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 PURAQ00577 322 aaKnown RBP11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 CSPP1Q1MSJ5 1256 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 LEXMQ3ZCV2 418 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 FAM47CQ5HY64 1035 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 AMOTL1Q8IY63 956 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 PURBQ96QR8 312 aaKnown RBP11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 PHOX2BQ99453 314 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 SEZ6LQ9BYH1 1024 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 NYAP2Q9P242 653 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 TECTAO75443 2155 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 TRIOO75962 3097 aa11.11□□□□□ -0.63
SMARCD2-208ENST00000580054 ZNF536O15090 1300 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 C5orf42Q9H799 3197 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 ASB14A6NK59 587 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 KIF28PB7ZC32 967 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 MYL3P08590 195 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 IQCF3P0C7M6 154 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 SUPT20HL2P0C7V6 817 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 RFC2P35250 354 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 OAZ1P54368 228 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 WDR5P61964 334 aaKnown RBP11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 DEFB103AP81534 67 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 PTCRAQ6ISU1 281 aaPredicted RBP11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 BCL11AQ9H165 835 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 SUGCTQ9HAC7 445 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 CLIP2Q9UDT6 1046 aa11.1□□□□□ -0.63
SMARCD2-208ENST00000580054 FEM1BQ9UK73 627 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms