RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CCPG1Q9ULG6 757 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 RIPK3Q9Y572 518 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 LOC285556D6RIA3 1793 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 PRPF40AO75400 957 aaKnown RBP28.78■■■□□ 2.2
SHMT1-207ENST00000580002 ZNF157P51786 506 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-207ENST00000580002 TMEM132BQ14DG7 1078 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 PPP1R18Q6NYC8 613 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 ASCC2Q9H1I8 757 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-207ENST00000580002 ZBED4O75132 1171 aa28.77■■■□□ 2.2
SHMT1-207ENST00000580002 GNA11P29992 359 aa28.77■■■□□ 2.2
SHMT1-207ENST00000580002 RASAL3Q86YV0 1011 aa28.77■■■□□ 2.2
SHMT1-207ENST00000580002 MEIS2O14770 477 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 KRT85P78386 507 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 GALNT17Q6IS24 598 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 HOMER2Q9NSB8 354 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 HOXC10Q9NYD6 342 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 PCDHB6Q9Y5E3 794 aa28.76■■■□□ 2.19
SHMT1-207ENST00000580002 CCL15-CCL14A0A0B4J2E2 113 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 GADD45BO75293 160 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 HOXA13P31271 388 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 CLK2P49760 499 aaKnown RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 CCL15Q16663 113 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 MUM1L1Q5H9M0 696 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 FASTKD5Q7L8L6 764 aaKnown RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 PTPN18Q99952 460 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 LMBRD1Q9NUN5 540 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 ALAS1P13196 640 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 REXO1Q8N1G1 1221 aaKnown RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 CUL5Q93034 780 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 BTBD7Q9P203 1132 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 ZNF214Q9UL59 606 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-207ENST00000580002 TLL2Q9Y6L7 1015 aa28.75■■■□□ 2.19
SHMT1-207ENST00000580002 BTBD19C9JJ37 291 aa28.74■■■□□ 2.19
SHMT1-207ENST00000580002 EDIL3O43854 480 aa28.74■■■□□ 2.19
SHMT1-207ENST00000580002 GTF2A2P52657 109 aa28.74■■■□□ 2.19
SHMT1-207ENST00000580002 INF2Q27J81 1249 aa28.74■■■□□ 2.19
SHMT1-207ENST00000580002 FAM177A1Q8N128 213 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-207ENST00000580002 LEO1Q8WVC0 666 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-207ENST00000580002 CLEC4DQ8WXI8 215 aa28.74■■■□□ 2.19
SHMT1-207ENST00000580002 ZNF396Q96N95 335 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-207ENST00000580002 CTDP1Q9Y5B0 961 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-207ENST00000580002 NFIBO00712 420 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 CYP2C8P10632 490 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 IRX3P78415 501 aaPredicted RBP28.73■■■□□ 2.19
SHMT1-207ENST00000580002 SF3A1Q15459 793 aaKnown RBP28.73■■■□□ 2.19
SHMT1-207ENST00000580002 RGMBQ6NW40 437 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 MYH15Q9Y2K3 1946 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 CETPP11597 493 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 MRPL12P52815 198 aaKnown RBP28.73■■■□□ 2.19
SHMT1-207ENST00000580002 R3HDMLQ9H3Y0 253 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 ABT1Q9ULW3 272 aaKnown RBP28.73■■■□□ 2.19
SHMT1-207ENST00000580002 MRVI1Q9Y6F6 885 aa28.73■■■□□ 2.19
SHMT1-207ENST00000580002 COL11A1P12107 1806 aaPredicted RBP28.72■■■□□ 2.19
SHMT1-207ENST00000580002 CCDC194A0A1B0GVG4 234 aa28.72■■■□□ 2.19
SHMT1-207ENST00000580002 ZBTB48P10074 688 aaPredicted RBP28.72■■■□□ 2.19
SHMT1-207ENST00000580002 ANO1Q5XXA6 986 aa28.72■■■□□ 2.19
SHMT1-207ENST00000580002 FAM43AQ8N2R8 423 aa28.72■■■□□ 2.19
SHMT1-207ENST00000580002 SPATA32Q96LK8 384 aa28.72■■■□□ 2.19
SHMT1-207ENST00000580002 RTEL1Q9NZ71 1219 aa28.72■■■□□ 2.19
SHMT1-207ENST00000580002 CFBP00751 764 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 HERVK_113P62684 666 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 PLS1Q14651 629 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 ZNF174Q15697 407 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 SNRNP48Q6IEG0 339 aaKnown RBP28.71■■■□□ 2.19
SHMT1-207ENST00000580002 LBX2Q6XYB7 198 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 BICD2Q8TD16 824 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 TXNRD2Q9NNW7 524 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 MRPL11Q9Y3B7 192 aaKnown RBP28.71■■■□□ 2.19
SHMT1-207ENST00000580002 ABCB11O95342 1321 aa28.71■■■□□ 2.19
SHMT1-207ENST00000580002 TMEM88BA6NKF7 163 aa28.7■■■□□ 2.19
SHMT1-207ENST00000580002 CNMDO75829 334 aa28.7■■■□□ 2.19
SHMT1-207ENST00000580002 LINC00301Q8NCQ3 95 aa28.7■■■□□ 2.19
SHMT1-207ENST00000580002 ZIC5Q96T25 663 aa28.7■■■□□ 2.19
SHMT1-207ENST00000580002 RCOR1Q9UKL0 485 aa28.7■■■□□ 2.19
SHMT1-207ENST00000580002 PDHXO00330 501 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 PTPAQ15257 358 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 RILPL1Q5EBL4 403 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 TBCKQ8TEA7 893 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 TRERF1Q96PN7 1200 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 PAGR1Q9BTK6 254 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 CFAP45Q9UL16 551 aa28.7■■■□□ 2.18
SHMT1-207ENST00000580002 MYPNQ86TC9 1320 aa28.69■■■□□ 2.18
SHMT1-207ENST00000580002 NASPP49321 788 aaPredicted RBP28.69■■■□□ 2.18
SHMT1-207ENST00000580002 POLR3EQ9NVU0 708 aa28.69■■■□□ 2.18
SHMT1-207ENST00000580002 RBPJLQ9UBG7 517 aa28.69■■■□□ 2.18
SHMT1-207ENST00000580002 FAM155AB1AL88 458 aaPredicted RBP28.68■■■□□ 2.18
SHMT1-207ENST00000580002 FDX1P10109 184 aa28.68■■■□□ 2.18
SHMT1-207ENST00000580002 NONOQ15233 471 aaKnown RBP eCLIP28.68■■■□□ 2.18
SHMT1-207ENST00000580002 Q3C1V9 767 aa28.68■■■□□ 2.18
SHMT1-207ENST00000580002 KRT25Q7Z3Z0 450 aa28.68■■■□□ 2.18
SHMT1-207ENST00000580002 FCHSD1Q86WN1 690 aa28.68■■■□□ 2.18
SHMT1-207ENST00000580002 OSBPP22059 807 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 MARCKSP29966 332 aaPredicted RBP28.67■■■□□ 2.18
SHMT1-207ENST00000580002 STAT3P40763 770 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 TTC38Q5R3I4 469 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 TMEM87AQ8NBN3 555 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 SLC10A3P09131 477 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 GRM1Q13255 1194 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 ATL3Q6DD88 541 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 PURBQ96QR8 312 aaKnown RBP28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms