RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GRIA2P42262 883 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 SEPHS1P49903 392 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 PPP2R2AP63151 447 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 RASGRF1Q13972 1273 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 RASA3Q14644 834 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 HLA-DQA1Q5Y7H0 255 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 SPATC1Q76KD6 591 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 CWC22Q9HCG8 908 aaKnown RBP8.21□□□□□ -1.1
NUP88-213ENST00000576862 GPRC5CQ9NQ84 441 aa8.21□□□□□ -1.1
NUP88-213ENST00000576862 YBX2Q9Y2T7 364 aaKnown RBP8.21□□□□□ -1.1
NUP88-213ENST00000576862 FAM221BA6H8Z2 402 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 WTIPA6NIX2 430 aaPredicted RBP8.2□□□□□ -1.1
NUP88-213ENST00000576862 CCDC85CA6NKD9 419 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 THBDP07204 575 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 SOGA3Q5TF21 947 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 GALNT18Q6P9A2 607 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 SIRT2Q8IXJ6 389 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 FRS2Q8WU20 508 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 SGSM3Q96HU1 749 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 ACSL6Q9UKU0 697 aa8.2□□□□□ -1.1
NUP88-213ENST00000576862 TBC1D8O95759 1140 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 SCG5P05408 212 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 KSR1Q8IVT5 923 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 NPLOC4Q8TAT6 608 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 UBXN4Q92575 508 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 ZNF669Q96BR6 464 aaPredicted RBP8.19□□□□□ -1.1
NUP88-213ENST00000576862 SNTG2Q9NY99 539 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 CLEC1BQ9P126 229 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 IMPACTQ9P2X3 320 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 RNF114Q9Y508 228 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 TAF6LQ9Y6J9 622 aa8.19□□□□□ -1.1
NUP88-213ENST00000576862 AGRPO00253 132 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 ARNTLO00327 626 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 MSL3P1P0C860 447 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 PLS3P13797 630 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 PRKCAP17252 672 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 HOXC12P31275 282 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 GFRA1P56159 465 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 PRSS53Q2L4Q9 553 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 MBLAC2Q68D91 279 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 CPNE8Q86YQ8 564 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 KREMEN2Q8NCW0 462 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 MKL1Q969V6 931 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 INTS4Q96HW7 963 aaKnown RBP8.18□□□□□ -1.1
NUP88-213ENST00000576862 FMNL2Q96PY5 1086 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 DEPDC7Q96QD5 511 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 CRTAC1Q9NQ79 661 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 ARHGEF4Q9NR80 690 aa8.18□□□□□ -1.1
NUP88-213ENST00000576862 PAX4O43316 350 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 SNRPB2P08579 225 aaKnown RBP8.17□□□□□ -1.1
NUP88-213ENST00000576862 PAMP19021 973 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 MVKQ03426 396 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 LAPTM5Q13571 262 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 DENND5AQ6IQ26 1287 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 PRR23BQ6ZRT6 265 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 LRP10Q7Z4F1 713 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 JAMLQ86YT9 394 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 NUP43Q8NFH3 380 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 C1orf159Q96HA4 380 aa8.17□□□□□ -1.1
NUP88-213ENST00000576862 TMEFF2Q9UIK5 374 aaPredicted RBP8.17□□□□□ -1.1
NUP88-213ENST00000576862 NPHP3-ACAD11A0A0J9YXS1 232 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 IQCA1LA6NCM1 817 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 DIAPH1O60610 1272 aaKnown RBP8.16□□□□□ -1.1
NUP88-213ENST00000576862 PPP1R11O60927 126 aaPredicted RBP8.16□□□□□ -1.1
NUP88-213ENST00000576862 PNLIPP16233 465 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 L1CAMP32004 1257 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 ECI1P42126 302 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 MTERF2Q49AM1 385 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 MPZL3Q6UWV2 235 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 TMEM145Q8NBT3 493 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 CCDC140Q96MF4 163 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 MMP19Q99542 508 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 SPATA9Q9BWV2 254 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 OSBPL2Q9H1P3 480 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 SLC6A17Q9H1V8 727 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 PFDN2Q9UHV9 154 aa8.16□□□□□ -1.1
NUP88-213ENST00000576862 LRRC10BA6NIK2 292 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 ADCY3O60266 1144 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 HSP90AA2PQ14568 343 aaPredicted RBP8.15□□□□□ -1.1
NUP88-213ENST00000576862 MLANAQ16655 118 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 INF2Q27J81 1249 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 YOD1Q5VVQ6 348 aaPredicted RBP8.15□□□□□ -1.1
NUP88-213ENST00000576862 CCDC103Q8IW40 242 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 LRRC47Q8N1G4 583 aaKnown RBP8.15□□□□□ -1.1
NUP88-213ENST00000576862 NLGN2Q8NFZ4 835 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 SRPK1Q96SB4 655 aaKnown RBP8.15□□□□□ -1.1
NUP88-213ENST00000576862 AARSD1Q9BTE6 412 aaKnown RBP8.15□□□□□ -1.1
NUP88-213ENST00000576862 IER2Q9BTL4 223 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 KCNK12Q9HB15 430 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 FAM53CQ9NYF3 392 aa8.15□□□□□ -1.1
NUP88-213ENST00000576862 TRBV23OR9-2A0A075B6M9 112 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 C7orf72A4D263 438 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 DLX3O60479 287 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 CPP00450 1065 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 SDHBP21912 280 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 KCNJ6P48051 423 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 CORO7P57737 925 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 CYP4F8P98187 520 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 SLC35F1Q5T1Q4 408 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 OGFOD2Q6N063 350 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms