RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ARMCX2Q7L311 632 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 ZNF589Q86UQ0 364 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 NUP133Q8WUM0 1156 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 TRIM43Q96BQ3 446 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 TRERF1Q96PN7 1200 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 SPC25Q9HBM1 224 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 A1CFQ9NQ94 594 aaKnown RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 PRR12Q9ULL5 1215 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 TACC3Q9Y6A5 838 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 ZNF536O15090 1300 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 MOXD2PA6NHM9 499 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 TOP1P11387 765 aaKnown RBP16.14■□□□□ 0.17
CCDC40-216ENST00000576241 NOVP48745 357 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 ACLYP53396 1101 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 HAND2P61296 217 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 CNTN2Q02246 1040 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 NUCB1Q02818 461 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 CCDC144BQ3MJ40 725 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 RASGRP2Q7LDG7 609 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 CCDC144CPQ8IYA2 1237 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 FGD4Q96M96 766 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 GAS2L1Q99501 681 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-216ENST00000576241 LRFN3Q9BTN0 628 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 RNF41Q9H4P4 317 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-216ENST00000576241 CCPG1Q9ULG6 757 aa16.14■□□□□ 0.17
CCDC40-216ENST00000576241 PQBP1O60828 265 aaKnown RBP16.13■□□□□ 0.17
CCDC40-216ENST00000576241 CLTBP09497 229 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 C6orf222P0C671 652 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-216ENST00000576241 SDSP20132 328 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 ITGB8P26012 769 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 SNAP25P60880 206 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 CCDC85BQ15834 202 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-216ENST00000576241 AKNAD1Q5T1N1 836 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 MFSD6Q6ZSS7 791 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 PLEKHM2Q8IWE5 1019 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 FAM133AQ8N9E0 248 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 EXOC6Q8TAG9 804 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 OSBPL3Q9H4L5 887 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 STARD7Q9NQZ5 370 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 DIAPH3Q9NSV4 1193 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 TCP11L1Q9NUJ3 509 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 MUC6Q6W4X9 2439 aa16.13■□□□□ 0.17
CCDC40-216ENST00000576241 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-216ENST00000576241 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-216ENST00000576241 ASB14A6NK59 587 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 IGHDP01880 384 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 SLC16A2P36021 539 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 KCNA10Q16322 511 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 SYDE2Q5VT97 1194 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 ALYREFQ86V81 257 aaKnown RBP16.12■□□□□ 0.17
CCDC40-216ENST00000576241 PCSK9Q8NBP7 692 aaKnown RBP16.12■□□□□ 0.17
CCDC40-216ENST00000576241 KLHDC9Q8NEP7 349 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 TIFAQ96CG3 184 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 SNX27Q96L92 541 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 GLT1D1Q96MS3 346 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 TMEM47Q9BQJ4 181 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 PRDM12Q9H4Q4 367 aa16.12■□□□□ 0.17
CCDC40-216ENST00000576241 DCDC2CA8MYV0 355 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 HIP1O00291 1037 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 ZNF213O14771 459 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 ICAM1P05362 532 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 CST5P28325 142 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-216ENST00000576241 MUM1L1Q5H9M0 696 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 GNASQ5JWF2 1037 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 NSMFQ6X4W1 530 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 NOL8Q76FK4 1167 aaKnown RBP16.11■□□□□ 0.17
CCDC40-216ENST00000576241 ESR2Q92731 530 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 VTI1AQ96AJ9 217 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 TTC14Q96N46 770 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 RANBP17Q9H2T7 1088 aaKnown RBP16.11■□□□□ 0.17
CCDC40-216ENST00000576241 EPHX3Q9H6B9 360 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 TMEM39AQ9NV64 488 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 CYP39A1Q9NYL5 469 aa16.11■□□□□ 0.17
CCDC40-216ENST00000576241 FRMPD2Q68DX3 1309 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-216ENST00000576241 MYADML2A6NDP7 307 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 SOWAHBA6NEL2 793 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 ADCY6O43306 1168 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 RAG1P15918 1043 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 GJA9P57773 515 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 TNFAIP2Q03169 654 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 CCSAPQ6IQ19 270 aaPredicted RBP16.1■□□□□ 0.17
CCDC40-216ENST00000576241 TTBK2Q6IQ55 1244 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 CWC27Q6UX04 472 aaKnown RBP16.1■□□□□ 0.17
CCDC40-216ENST00000576241 BTNL9Q6UXG8 535 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 ANKRD33Q7Z3H0 272 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 TBC1D10CQ8IV04 446 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 KATNBL1Q9H079 304 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 UPF3AQ9H1J1 476 aaKnown RBP16.1■□□□□ 0.17
CCDC40-216ENST00000576241 GPCPD1Q9NPB8 672 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 PNMA2Q9UL42 364 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 ELP1O95163 1332 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 MROH7Q68CQ1 1323 aa16.1■□□□□ 0.17
CCDC40-216ENST00000576241 KIAA0355O15063 1070 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 ASGR1P07306 291 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 PDHBP11177 359 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 BMP1P13497 986 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 NT5C2P49902 561 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 ADGRE1Q14246 886 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 TOX2Q96NM4 488 aa16.09■□□□□ 0.17
CCDC40-216ENST00000576241 SMCHD1A6NHR9 2005 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms