RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 EXOSC9Q06265 439 aaKnown RBP19.87■□□□□ 0.77
VPS53-218ENST00000575207 CTC1Q2NKJ3 1217 aa19.87■□□□□ 0.77
VPS53-218ENST00000575207 REPS2Q8NFH8 660 aa19.87■□□□□ 0.77
VPS53-218ENST00000575207 MAP1BP46821 2468 aaKnown RBP19.87■□□□□ 0.77
VPS53-218ENST00000575207 MYO7AQ13402 2215 aa19.87■□□□□ 0.77
VPS53-218ENST00000575207 VWA5AO00534 786 aa19.86■□□□□ 0.77
VPS53-218ENST00000575207 TNFAIP2Q03169 654 aa19.86■□□□□ 0.77
VPS53-218ENST00000575207 TLK2Q86UE8 772 aa19.86■□□□□ 0.77
VPS53-218ENST00000575207 FGD4Q96M96 766 aa19.86■□□□□ 0.77
VPS53-218ENST00000575207 MCM3APO60318 1980 aa19.86■□□□□ 0.77
VPS53-218ENST00000575207 CEP250Q9BV73 2442 aa19.85■□□□□ 0.77
VPS53-218ENST00000575207 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.85■□□□□ 0.77
VPS53-218ENST00000575207 KDM4AO75164 1064 aa19.85■□□□□ 0.77
VPS53-218ENST00000575207 DEFB103AP81534 67 aa19.85■□□□□ 0.77
VPS53-218ENST00000575207 ARMCX2Q7L311 632 aa19.85■□□□□ 0.77
VPS53-218ENST00000575207 C17orf80Q9BSJ5 609 aa19.85■□□□□ 0.77
VPS53-218ENST00000575207 NSUN3Q9H649 340 aaKnown RBP19.85■□□□□ 0.77
VPS53-218ENST00000575207 WDR46O15213 610 aaKnown RBP19.84■□□□□ 0.77
VPS53-218ENST00000575207 ARID4AP29374 1257 aaPredicted RBP19.84■□□□□ 0.77
VPS53-218ENST00000575207 SMAD4Q13485 552 aaKnown RBP19.84■□□□□ 0.77
VPS53-218ENST00000575207 MCTP2Q6DN12 878 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 TTC6Q86TZ1 520 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 RPAINQ86UA6 219 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 SPICE1Q8N0Z3 855 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 RETREG2Q8NC44 543 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS53-218ENST00000575207 MYH1P12882 1939 aa19.84■□□□□ 0.77
VPS53-218ENST00000575207 ANKRD11Q6UB99 2663 aaPredicted RBP19.83■□□□□ 0.77
VPS53-218ENST00000575207 AP5M1Q9H0R1 490 aa19.83■□□□□ 0.77
VPS53-218ENST00000575207 VCPKMTQ9H867 229 aa19.83■□□□□ 0.77
VPS53-218ENST00000575207 AKAP2Q9Y2D5 859 aa19.83■□□□□ 0.77
VPS53-218ENST00000575207 TMX2Q9Y320 296 aa19.83■□□□□ 0.77
VPS53-218ENST00000575207 TANC1Q9C0D5 1861 aa19.83■□□□□ 0.76
VPS53-218ENST00000575207 LOC730098B7Z3J9 87 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 MCAMP43121 646 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 DLX2Q07687 328 aaPredicted RBP19.82■□□□□ 0.76
VPS53-218ENST00000575207 COL9A2Q14055 689 aaPredicted RBP19.82■□□□□ 0.76
VPS53-218ENST00000575207 PUM1Q14671 1186 aaKnown RBP eCLIP19.82■□□□□ 0.76
VPS53-218ENST00000575207 CBX2Q14781 532 aaPredicted RBP19.82■□□□□ 0.76
VPS53-218ENST00000575207 NOL8Q76FK4 1167 aaKnown RBP19.82■□□□□ 0.76
VPS53-218ENST00000575207 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.82■□□□□ 0.76
VPS53-218ENST00000575207 FRMD5Q7Z6J6 570 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 SIAH1Q8IUQ4 282 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 COPRSQ9NQ92 184 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 FBXO28Q9NVF7 368 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 PPP1R9AQ9ULJ8 1098 aa19.82■□□□□ 0.76
VPS53-218ENST00000575207 FASNP49327 2511 aaKnown RBP19.81■□□□□ 0.76
VPS53-218ENST00000575207 USP24Q9UPU5 2620 aa19.81■□□□□ 0.76
VPS53-218ENST00000575207 CLUL1Q15846 466 aa19.81■□□□□ 0.76
VPS53-218ENST00000575207 LRRFIP1Q32MZ4 808 aaKnown RBP19.81■□□□□ 0.76
VPS53-218ENST00000575207 CCDC144CPQ8IYA2 1237 aa19.81■□□□□ 0.76
VPS53-218ENST00000575207 PA2G4Q9UQ80 394 aaKnown RBP19.81■□□□□ 0.76
VPS53-218ENST00000575207 Q9Y3F1 56 aa19.81■□□□□ 0.76
VPS53-218ENST00000575207 SPTBN2O15020 2390 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 FRYLO94915 3013 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 H3BNC9 293 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 DYNC1LI2O43237 492 aaPredicted RBP19.8■□□□□ 0.76
VPS53-218ENST00000575207 IGSF3O75054 1194 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 DYNLL1P63167 89 aaKnown RBP19.8■□□□□ 0.76
VPS53-218ENST00000575207 GABPAQ06546 454 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 BFSP2Q13515 415 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 GPNMBQ14956 572 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 SAMD11Q96NU1 681 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 CRBNQ96SW2 442 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 TEX13BQ9BXU2 312 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 RIPK3Q9Y572 518 aa19.8■□□□□ 0.76
VPS53-218ENST00000575207 PLCD1P51178 756 aa19.79■□□□□ 0.76
VPS53-218ENST00000575207 EPC2Q52LR7 807 aa19.79■□□□□ 0.76
VPS53-218ENST00000575207 INSL6Q9Y581 213 aa19.79■□□□□ 0.76
VPS53-218ENST00000575207 ABHD14A-ACY1A0A1B0GW23 586 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 MPHOSPH10O00566 681 aaKnown RBP19.78■□□□□ 0.76
VPS53-218ENST00000575207 SMPD1P17405 629 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 PTGS1P23219 599 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 ST3GAL2Q16842 350 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 CNKSR3Q6P9H4 555 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 TMEM179Q6ZVK1 233 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 SH2D4AQ9H788 454 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 FAM208BQ5VWN6 2430 aa19.78■□□□□ 0.76
VPS53-218ENST00000575207 USP5P45974 858 aa19.77■□□□□ 0.76
VPS53-218ENST00000575207 SNRNP48Q6IEG0 339 aaKnown RBP19.77■□□□□ 0.76
VPS53-218ENST00000575207 SP7Q8TDD2 431 aaPredicted RBP19.77■□□□□ 0.76
VPS53-218ENST00000575207 NEUROD6Q96NK8 337 aa19.77■□□□□ 0.76
VPS53-218ENST00000575207 ARHGEF10LQ9HCE6 1279 aa19.77■□□□□ 0.76
VPS53-218ENST00000575207 TFCP2Q12800 502 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 GPM6BQ13491 265 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 CERS3Q8IU89 383 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 RIPOR3Q96MK2 946 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 DLL3Q9NYJ7 618 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 CD207Q9UJ71 328 aa19.76■□□□□ 0.75
VPS53-218ENST00000575207 EFCAB14O75071 495 aa19.75■□□□□ 0.75
VPS53-218ENST00000575207 EYA4O95677 639 aa19.75■□□□□ 0.75
VPS53-218ENST00000575207 CXCL10P02778 98 aa19.75■□□□□ 0.75
VPS53-218ENST00000575207 HTRA4P83105 476 aaPredicted RBP19.75■□□□□ 0.75
VPS53-218ENST00000575207 GORABQ5T7V8 394 aa19.75■□□□□ 0.75
VPS53-218ENST00000575207 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.75■□□□□ 0.75
VPS53-218ENST00000575207 ATP2A1O14983 1001 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 TBX10O75333 385 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 PDGFBP01127 241 aaPredicted RBP19.74■□□□□ 0.75
VPS53-218ENST00000575207 UQCRFS1P1P0C7P4 283 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 PURAQ00577 322 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms