RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SMG5Q9UPR3 1016 aaKnown RBP5.12□□□□□ -1.59
NUP88-209ENST00000574855 ANKRD34BA5PLL1 514 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 FGF10O15520 208 aaPredicted RBP5.11□□□□□ -1.59
NUP88-209ENST00000574855 SSBP05455 408 aaKnown RBP eCLIP5.11□□□□□ -1.59
NUP88-209ENST00000574855 CD3EP07766 207 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 SDHBP21912 280 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 ERVFRD-1P60508 538 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 SRSF3P84103 164 aaKnown RBP5.11□□□□□ -1.59
NUP88-209ENST00000574855 TMEM62Q0P6H9 643 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 KCNA10Q16322 511 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 CILP2Q8IUL8 1156 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 LRRC56Q8IYG6 542 aaPredicted RBP5.11□□□□□ -1.59
NUP88-209ENST00000574855 FAM169BQ8N8A8 192 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 RCC1LQ96I51 464 aaKnown RBP5.11□□□□□ -1.59
NUP88-209ENST00000574855 FGD4Q96M96 766 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 PTCHD1Q96NR3 888 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 JMJD8Q96S16 334 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 SIRT5Q9NXA8 310 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 SUGT1Q9Y2Z0 365 aa5.11□□□□□ -1.59
NUP88-209ENST00000574855 A0A1W2PQJ5 194 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 IFNGR1P15260 489 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 CEBPAP49715 358 aaPredicted RBP5.1□□□□□ -1.59
NUP88-209ENST00000574855 RBM25P49756 843 aaKnown RBP5.1□□□□□ -1.59
NUP88-209ENST00000574855 YBX1P67809 324 aaKnown RBP5.1□□□□□ -1.59
NUP88-209ENST00000574855 KIR3DS1Q14943 382 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 NCAPHQ15003 741 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 EEF1DP3Q658K8 133 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 CIAPIN1Q6FI81 312 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 RCSD1Q6JBY9 416 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 ARHGEF39Q8N4T4 335 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 ZNF428Q96B54 188 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 APBA2Q99767 749 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 IMPACTQ9P2X3 320 aa5.1□□□□□ -1.59
NUP88-209ENST00000574855 C2orf71A6NGG8 1288 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 AURKAO14965 403 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 VAMP4O75379 141 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 NAT2P11245 290 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 L1CAMP32004 1257 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 VIPR1P32241 457 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 SEPHS1P49903 392 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 ZNF143P52747 638 aaPredicted RBP5.09□□□□□ -1.59
NUP88-209ENST00000574855 AMPD2Q01433 879 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 GRB10Q13322 594 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 RAB3GAP1Q15042 981 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 TNNI3KQ59H18 835 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 SIAH1Q8IUQ4 282 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 CRACR2BQ8N4Y2 399 aaPredicted RBP5.09□□□□□ -1.59
NUP88-209ENST00000574855 NLGN2Q8NFZ4 835 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.09□□□□□ -1.596e-6■■□□□ 11.7
NUP88-209ENST00000574855 SGPP1Q9BX95 441 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 CGGBP1Q9UFW8 167 aaPredicted RBP5.09□□□□□ -1.59
NUP88-209ENST00000574855 SUSD2Q9UGT4 822 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 AKT3Q9Y243 479 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 MRVI1Q9Y6F6 885 aa5.09□□□□□ -1.59
NUP88-209ENST00000574855 NISCHQ9Y2I1 1504 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 NUDT19A8MXV4 375 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 NOP56O00567 594 aaKnown RBP5.08□□□□□ -1.6
NUP88-209ENST00000574855 SMAD7O15105 426 aaKnown RBP5.08□□□□□ -1.6
NUP88-209ENST00000574855 NUAK1O60285 661 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 LINC00310P59036 64 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 MVKQ03426 396 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 CBX2Q14781 532 aaPredicted RBP5.08□□□□□ -1.6
NUP88-209ENST00000574855 NR1I3Q14994 352 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 DPY19L1Q2PZI1 675 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 POMZP3Q6PJE2 187 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 GCM1Q9NP62 436 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 PDLIM7Q9NR12 457 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 KLHL14Q9P2G3 628 aa5.08□□□□□ -1.6
NUP88-209ENST00000574855 MBD1Q9UIS9 605 aaPredicted RBP5.08□□□□□ -1.6
NUP88-209ENST00000574855 CNOT6Q9ULM6 557 aaKnown RBP5.08□□□□□ -1.6
NUP88-209ENST00000574855 TRBV23OR9-2A0A075B6M9 112 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 STXBP3O00186 592 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 ZSCAN22P10073 491 aaPredicted RBP5.07□□□□□ -1.6
NUP88-209ENST00000574855 CORO7P57737 925 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 ARID5AQ03989 594 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 ZNF385BQ569K4 471 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 BICRALQ6AI39 1079 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 AMIGO3Q86WK7 504 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 BVESQ8NE79 360 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 MCMBPQ9BTE3 642 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 TNFRSF12AQ9NP84 129 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 ACTR10Q9NZ32 417 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 BACE2Q9Y5Z0 518 aa5.07□□□□□ -1.6
NUP88-209ENST00000574855 E9PSI1 815 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 RFXAPO00287 272 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 N4BP3O15049 544 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 MSL3P1P0C860 447 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 RBM10P98175 930 aaKnown RBP5.06□□□□□ -1.6
NUP88-209ENST00000574855 FBLN7Q53RD9 439 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 LARP1BQ659C4 914 aaKnown RBP5.06□□□□□ -1.6
NUP88-209ENST00000574855 PAQR3Q6TCH7 311 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 RPTNQ6XPR3 784 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 TMC6Q7Z403 805 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 C1QL4Q86Z23 238 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 ZNF513Q8N8E2 541 aaPredicted RBP5.06□□□□□ -1.6
NUP88-209ENST00000574855 PPP1R14AQ96A00 147 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 SIGLEC10Q96LC7 697 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 IRF2BPLQ9H1B7 796 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 CNTD2Q9H8S5 307 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 APEX2Q9UBZ4 518 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 1269.6 ms