RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 NUDT12Q9BQG2 462 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 NACAP1Q9BZK3 213 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 LNPKQ9C0E8 428 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 RNF208Q9H0X6 261 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 SH2D4AQ9H788 454 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 NXF1Q9UBU9 619 aaKnown RBP8.87□□□□□ -0.99
NUP88-205ENST00000572809 MYH7P12883 1935 aa8.87□□□□□ -0.99
NUP88-205ENST00000572809 DDX60LQ5H9U9 1706 aaKnown RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 BAZ2AQ9UIF9 1905 aaKnown RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 CNMDO75829 334 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 GJB1P08034 283 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 EEF2P13639 858 aaKnown RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 RASA1P20936 1047 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 LORP23490 312 aaPredicted RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 CCNA1P78396 465 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 KIAA1755Q5JYT7 1200 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 PLEKHH3Q7Z736 793 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 CHD1LQ86WJ1 897 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 LPAR1Q92633 364 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 PORCNQ9H237 461 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 VCPKMTQ9H867 229 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 ZNF287Q9HBT7 754 aa8.86□□□□□ -0.99
NUP88-205ENST00000572809 CWC22Q9HCG8 908 aaKnown RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 EPB41L4AQ9HCS5 686 aaPredicted RBP8.86□□□□□ -0.99
NUP88-205ENST00000572809 SGPL1O95470 568 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 INHAP05111 366 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 SLC3A2P08195 630 aaKnown RBP8.85□□□□□ -0.99
NUP88-205ENST00000572809 CYP2B6P20813 491 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 GJA8P48165 433 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 MMP16P51512 607 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 NUCB1Q02818 461 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 GPR142Q7Z601 462 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 TICAM2Q86XR7 235 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 CLEC10AQ8IUN9 316 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 SPICE1Q8N0Z3 855 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 TANGO6Q9C0B7 1094 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 NAPBQ9H115 298 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 UNC93B1Q9H1C4 597 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 HELLSQ9NRZ9 838 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 BTBD7Q9P203 1132 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 DOCK3Q8IZD9 2030 aa8.85□□□□□ -0.99
NUP88-205ENST00000572809 KIAA0100Q14667 2235 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 WDR46O15213 610 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 FLOT1O75955 427 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 TFRCP02786 760 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 HMGCRP04035 888 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 XRCC5P13010 732 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 CAPN2P17655 700 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 PDE4BQ07343 736 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 PPARAQ07869 468 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 WDR78Q5VTH9 848 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 CCDC129Q6ZRS4 1044 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 PLEKHM2Q8IWE5 1019 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 TRMT44Q8IYL2 757 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 U2AF1L4Q8WU68 220 aaKnown RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 SOCS4Q8WXH5 440 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 USP6NLQ92738 828 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 RILPL2Q969X0 211 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 OSBPL3Q9H4L5 887 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 HMX1Q9NP08 348 aaPredicted RBP8.84□□□□□ -0.99
NUP88-205ENST00000572809 NYAP2Q9P242 653 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 CLIP2Q9UDT6 1046 aa8.84□□□□□ -0.99
NUP88-205ENST00000572809 RPTORQ8N122 1335 aa8.83□□□□□ -1
NUP88-205ENST00000572809 SLC15A5A6NIM6 579 aa8.83□□□□□ -1
NUP88-205ENST00000572809 F5H6K3 240 aa8.83□□□□□ -1
NUP88-205ENST00000572809 STRNO43815 780 aa8.83□□□□□ -1
NUP88-205ENST00000572809 PRDM1O75626 825 aa8.83□□□□□ -1
NUP88-205ENST00000572809 RGS2P41220 211 aa8.83□□□□□ -1
NUP88-205ENST00000572809 SKOR1P84550 965 aa8.83□□□□□ -1
NUP88-205ENST00000572809 KLRC3Q07444 240 aa8.83□□□□□ -1
NUP88-205ENST00000572809 MCMDC2Q4G0Z9 681 aa8.83□□□□□ -1
NUP88-205ENST00000572809 MB21D1Q8N884 522 aa8.83□□□□□ -1
NUP88-205ENST00000572809 TRIB2Q92519 343 aa8.83□□□□□ -1
NUP88-205ENST00000572809 IRF7Q92985 503 aa8.83□□□□□ -1
NUP88-205ENST00000572809 MKL1Q969V6 931 aa8.83□□□□□ -1
NUP88-205ENST00000572809 SHISA4Q96DD7 197 aa8.83□□□□□ -1
NUP88-205ENST00000572809 CALR3Q96L12 384 aaKnown RBP8.83□□□□□ -1
NUP88-205ENST00000572809 DEFB118Q96PH6 123 aa8.83□□□□□ -1
NUP88-205ENST00000572809 MOV10L1Q9BXT6 1211 aaKnown RBP8.83□□□□□ -1
NUP88-205ENST00000572809 IVNS1ABPQ9Y6Y0 642 aa8.83□□□□□ -1
NUP88-205ENST00000572809 RBBP6Q7Z6E9 1792 aaKnown RBP8.83□□□□□ -1
NUP88-205ENST00000572809 ROBO3Q96MS0 1386 aa8.83□□□□□ -1
NUP88-205ENST00000572809 MYH8P13535 1937 aa8.82□□□□□ -1
NUP88-205ENST00000572809 IGKV6D-41A0A0C4DH26 115 aa8.82□□□□□ -1
NUP88-205ENST00000572809 CFAP99D6REC4 459 aa8.82□□□□□ -1
NUP88-205ENST00000572809 TSPY3P0CV98 308 aa8.82□□□□□ -1
NUP88-205ENST00000572809 TSPY8P0CW00 308 aa8.82□□□□□ -1
NUP88-205ENST00000572809 SDSP20132 328 aa8.82□□□□□ -1
NUP88-205ENST00000572809 IRX6P78412 446 aaPredicted RBP8.82□□□□□ -1
NUP88-205ENST00000572809 TFAP4Q01664 338 aa8.82□□□□□ -1
NUP88-205ENST00000572809 NMIQ13287 307 aaPredicted RBP8.82□□□□□ -1
NUP88-205ENST00000572809 PLS1Q14651 629 aa8.82□□□□□ -1
NUP88-205ENST00000572809 ALX1Q15699 326 aa8.82□□□□□ -1
NUP88-205ENST00000572809 CCL14Q16627 93 aa8.82□□□□□ -1
NUP88-205ENST00000572809 FAM47AQ5JRC9 791 aa8.82□□□□□ -1
NUP88-205ENST00000572809 FAM83BQ5T0W9 1011 aa8.82□□□□□ -1
NUP88-205ENST00000572809 VPS53Q5VIR6 699 aa8.82□□□□□ -1
NUP88-205ENST00000572809 RETREG3Q86VR2 466 aa8.82□□□□□ -1
NUP88-205ENST00000572809 NEDD1Q8NHV4 660 aa8.82□□□□□ -1
NUP88-205ENST00000572809 PRR7Q8TB68 274 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms