RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MTUS1Q9ULD2 1270 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 GRIN2DO15399 1336 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 TNKSO95271 1327 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 CYP2D7A0A087X1C5 515 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 USP17L12C9JPN9 530 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 USP17L21D6R901 530 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 F5H6K3 240 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 GOLIM4O00461 696 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 DCXO43602 365 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 KLRC3Q07444 240 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 IKQ13123 557 aaPredicted RBP13.27□□□□□ -0.29
VPS53-207ENST00000570510 PUS10Q3MIT2 529 aaKnown RBP13.27□□□□□ -0.29
VPS53-207ENST00000570510 LEXMQ3ZCV2 418 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 BRDTQ58F21 947 aaPredicted RBP13.27□□□□□ -0.29
VPS53-207ENST00000570510 C12orf60Q5U649 245 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 PTCRAQ6ISU1 281 aaPredicted RBP13.27□□□□□ -0.29
VPS53-207ENST00000570510 C16orf86Q6ZW13 317 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 EEPD1Q7L9B9 569 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 BCL11AQ9H165 835 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 ACAD9Q9H845 621 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 MKNK2Q9HBH9 465 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 POLR3EQ9NVU0 708 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 GNEQ9Y223 722 aaKnown RBP13.27□□□□□ -0.29
VPS53-207ENST00000570510 FAM50BQ9Y247 325 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 Q9Y3F1 56 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 NAV1Q8NEY1 1877 aa13.27□□□□□ -0.29
VPS53-207ENST00000570510 ASTN1O14525 1302 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 PRKAB2O43741 272 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 MBD4O95243 580 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 MYL3P08590 195 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 TRIM27P14373 513 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 SMPD1P17405 629 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 BFSP2Q13515 415 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 EP400NLQ6ZTU2 488 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 KIAA1211Q6ZU35 1233 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 ERC1Q8IUD2 1116 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 MFSD14AQ96MC6 490 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 SLC38A10Q9HBR0 1119 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 FEM1BQ9UK73 627 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 TRANK1O15050 2925 aa13.26□□□□□ -0.29
VPS53-207ENST00000570510 BAIAP3O94812 1187 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 ARHGEF15O94989 841 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 NDUFB10O96000 172 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 CPT1AP50416 773 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 OAZ1P54368 228 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 CHMP4BP1P59074 171 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 FGD4Q96M96 766 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.25□□□□□ -0.294e-7■■■■□ 23.1
VPS53-207ENST00000570510 KATNBL1Q9H079 304 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 CLIP2Q9UDT6 1046 aa13.25□□□□□ -0.29
VPS53-207ENST00000570510 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 LPXNO60711 386 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 IQCF3P0C7M6 154 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 FDX1P10109 184 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 IL9P15248 144 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS53-207ENST00000570510 FBXO16Q8IX29 292 aaPredicted RBP13.24□□□□□ -0.29
VPS53-207ENST00000570510 STK11IPQ8N1F8 1099 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 CCDC155Q8N6L0 562 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 FAM133AQ8N9E0 248 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.24□□□□□ -0.29
VPS53-207ENST00000570510 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS53-207ENST00000570510 TGS1Q96RS0 853 aaKnown RBP13.24□□□□□ -0.29
VPS53-207ENST00000570510 UPF3BQ9BZI7 483 aaKnown RBP13.24□□□□□ -0.29
VPS53-207ENST00000570510 C1orf115Q9H7X2 142 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 PDGFCQ9NRA1 345 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 NYAP2Q9P242 653 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 NOP58Q9Y2X3 529 aaKnown RBP13.24□□□□□ -0.29
VPS53-207ENST00000570510 SLC4A4Q9Y6R1 1079 aa13.24□□□□□ -0.29
VPS53-207ENST00000570510 RAD50Q92878 1312 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.23□□□□□ -0.29
VPS53-207ENST00000570510 PTGS1P23219 599 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 PPP4R3CPQ6ZMV5 832 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 VWCEQ96DN2 955 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 MTG1Q9BT17 334 aaPredicted RBP13.23□□□□□ -0.29
VPS53-207ENST00000570510 RNF146Q9NTX7 359 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 CTNNA3Q9UI47 895 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 MYH8P13535 1937 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 PARP14Q460N5 1801 aa13.23□□□□□ -0.29
VPS53-207ENST00000570510 TCRBV5S4A2TA0A5A2 114 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 LCHNA4D1U4 455 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 SOWAHBA6NEL2 793 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 GRXCR2A6NFK2 248 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 ST18O60284 1047 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 IFIT2P09913 472 aaKnown RBP13.22□□□□□ -0.29
VPS53-207ENST00000570510 ALAS1P13196 640 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 PTPROQ16827 1216 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 NBPF20Q3BBV1 942 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 SPRED2Q7Z698 418 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 TRERF1Q96PN7 1200 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 RAD9AQ99638 391 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 SUGCTQ9HAC7 445 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 ZNF287Q9HBT7 754 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 VTA1Q9NP79 307 aa13.22□□□□□ -0.29
VPS53-207ENST00000570510 A1CFQ9NQ94 594 aaKnown RBP13.22□□□□□ -0.29
VPS53-207ENST00000570510 ZBED9Q6R2W3 1325 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 TMEM232C9JQI7 657 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 H3BQ06 376 aaPredicted RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 BMP3P12645 472 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 STAT2P52630 851 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms