RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 MUM1L1Q5H9M0 696 aa17.65■□□□□ 0.42
CLN3-236ENST00000568558 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-236ENST00000568558 DCAF4Q8WV16 495 aa17.65■□□□□ 0.42
CLN3-236ENST00000568558 CYP39A1Q9NYL5 469 aa17.65■□□□□ 0.42
CLN3-236ENST00000568558 MTMR7Q9Y216 660 aa17.65■□□□□ 0.42
CLN3-236ENST00000568558 TMEM265A0A087WTH1 108 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 A0A0D9SFI3 127 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 BEX3Q00994 111 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 HDAC1Q13547 482 aaPredicted RBP17.64■□□□□ 0.41
CLN3-236ENST00000568558 MFSD5Q6N075 450 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 FAM126BQ8IXS8 530 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 VTI1AQ96AJ9 217 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 FAM227BQ96M60 508 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 CCPG1Q9ULG6 757 aa17.64■□□□□ 0.41
CLN3-236ENST00000568558 GNEQ9Y223 722 aaKnown RBP17.64■□□□□ 0.41
CLN3-236ENST00000568558 FGAP02671 866 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 ICAM1P05362 532 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 CCDC96Q2M329 555 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 MCMDC2Q4G0Z9 681 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 TLK2Q86UE8 772 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 TICAM2Q86XR7 235 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 MYLIPQ8WY64 445 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.63■□□□□ 0.413e-6■□□□□ 10.1
CLN3-236ENST00000568558 RANBP17Q9H2T7 1088 aaKnown RBP17.63■□□□□ 0.41
CLN3-236ENST00000568558 TOMM22Q9NS69 142 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 DDX49Q9Y6V7 483 aaKnown RBP17.63■□□□□ 0.41
CLN3-236ENST00000568558 ZMYM6O95789 1325 aa17.63■□□□□ 0.41
CLN3-236ENST00000568558 MYH6P13533 1939 aa17.62■□□□□ 0.41
CLN3-236ENST00000568558 TLR3O15455 904 aaKnown RBP17.62■□□□□ 0.41
CLN3-236ENST00000568558 PPIGQ13427 754 aaKnown RBP eCLIP17.62■□□□□ 0.416e-7■■□□□ 11.8
CLN3-236ENST00000568558 TTBK2Q6IQ55 1244 aa17.62■□□□□ 0.41
CLN3-236ENST00000568558 BTNL9Q6UXG8 535 aa17.62■□□□□ 0.41
CLN3-236ENST00000568558 NSMFQ6X4W1 530 aa17.62■□□□□ 0.41
CLN3-236ENST00000568558 NOL8Q76FK4 1167 aaKnown RBP17.62■□□□□ 0.41
CLN3-236ENST00000568558 MAFAQ8NHW3 353 aaPredicted RBP17.62■□□□□ 0.41
CLN3-236ENST00000568558 TMEM47Q9BQJ4 181 aa17.62■□□□□ 0.41
CLN3-236ENST00000568558 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 CD4P01730 458 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 HSPD1P10809 573 aaKnown RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 TOP1P11387 765 aaKnown RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 SMPD1P17405 629 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 PTGS1P23219 599 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 SLC16A2P36021 539 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 NMIQ13287 307 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 FSCN1Q16658 493 aaKnown RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 RRP12Q5JTH9 1297 aaKnown RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 TAPT1Q6NXT6 567 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 CXCL17Q6UXB2 119 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 C16orf59Q7L2K0 433 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 ZNF589Q86UQ0 364 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 FBXO16Q8IX29 292 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 SLC43A3Q8NBI5 491 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 MORC4Q8TE76 937 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 COL25A1Q9BXS0 654 aaPredicted RBP17.61■□□□□ 0.41
CLN3-236ENST00000568558 PPP1R12CQ9BZL4 782 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 AP5M1Q9H0R1 490 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 PDGFCQ9NRA1 345 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 TCP11L1Q9NUJ3 509 aa17.61■□□□□ 0.41
CLN3-236ENST00000568558 VCANP13611 3396 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 CABYRO75952 493 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 FOSL2P15408 326 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 CSF2RAP15509 400 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 DNAJB2P25686 324 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 TMEM240Q5SV17 173 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 SYDE2Q5VT97 1194 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 IQSEC1Q6DN90 963 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 EEPD1Q7L9B9 569 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 TMEM199Q8N511 208 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 PURBQ96QR8 312 aaKnown RBP17.6■□□□□ 0.41
CLN3-236ENST00000568558 VTA1Q9NP79 307 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 Q9Y3F1 56 aa17.6■□□□□ 0.41
CLN3-236ENST00000568558 PRUNE2Q8WUY3 3088 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 FRMPD2Q68DX3 1309 aaPredicted RBP17.59■□□□□ 0.41
CLN3-236ENST00000568558 CCDC171Q6TFL3 1326 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 NFIBO00712 420 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 DYNC1LI2O43237 492 aaPredicted RBP17.59■□□□□ 0.41
CLN3-236ENST00000568558 HAND2P61296 217 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 TMEM63BQ5T3F8 832 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 RASIP1Q5U651 963 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 LNPKQ9C0E8 428 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 GPCPD1Q9NPB8 672 aa17.59■□□□□ 0.41
CLN3-236ENST00000568558 ADD3Q9UEY8 706 aaKnown RBP17.59■□□□□ 0.41
CLN3-236ENST00000568558 SPTBN5Q9NRC6 3674 aaKnown RBP17.58■□□□□ 0.41
CLN3-236ENST00000568558 GRIN2DO15399 1336 aa17.58■□□□□ 0.4
CLN3-236ENST00000568558 PDHBP11177 359 aa17.58■□□□□ 0.4
CLN3-236ENST00000568558 CYP2C18P33260 490 aa17.58■□□□□ 0.4
CLN3-236ENST00000568558 ALDH5A1P51649 535 aaPredicted RBP17.58■□□□□ 0.4
CLN3-236ENST00000568558 ITGA7Q13683 1181 aa17.58■□□□□ 0.4
CLN3-236ENST00000568558 BAATQ14032 418 aaPredicted RBP17.58■□□□□ 0.4
CLN3-236ENST00000568558 PSRC1Q6PGN9 363 aaPredicted RBP17.58■□□□□ 0.4
CLN3-236ENST00000568558 SEZ6LQ9BYH1 1024 aa17.58■□□□□ 0.4
CLN3-236ENST00000568558 MYO9BQ13459 2157 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 SCN10AQ9Y5Y9 1956 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 LOC102724159A0A0B4J2E5 919 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 TRIM6-TRIM34B2RNG4 842 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 ZEB2O60315 1214 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 ACRP10323 421 aa17.57■□□□□ 0.4
CLN3-236ENST00000568558 PCP11498 1178 aaKnown RBP17.57■□□□□ 0.4
CLN3-236ENST00000568558 GRIN2CQ14957 1233 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms