RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 QRICH1Q2TAL8 776 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 OTUD7BQ6GQQ9 843 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 HOMER1Q86YM7 354 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 PIBF1Q8WXW3 757 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 DDX11Q96FC9 970 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 PARK7Q99497 189 aaKnown RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 RBM27Q9P2N5 1060 aaKnown RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 ORC3Q9UBD5 711 aaPredicted RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 ZNF536O15090 1300 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 ATP2A1O14983 1001 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 ZBED4O75132 1171 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 CNMDO75829 334 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 ICAM1P05362 532 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 SCG2P13521 617 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 SLC4A3P48751 1232 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 OAZ1P54368 228 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 AKAP17AQ02040 695 aaKnown RBP9.77□□□□□ -0.85
SF3B3-212ENST00000568539 CAMK2BQ13554 666 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 TMEM132BQ14DG7 1078 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 CCDC174Q6PII3 467 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 MB21D1Q8N884 522 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 SMCR8Q8TEV9 937 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-212ENST00000568539 GTF3C2Q8WUA4 911 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-212ENST00000568539 TXNRD2Q9NNW7 524 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 BTBD7Q9P203 1132 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 RBPJLQ9UBG7 517 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 SEC63Q9UGP8 760 aaKnown RBP9.77□□□□□ -0.85
SF3B3-212ENST00000568539 ZNF214Q9UL59 606 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-212ENST00000568539 SMC3Q9UQE7 1217 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 RABGAP1Q9Y3P9 1069 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 THSD7BQ9C0I4 1608 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 ADGRA2Q96PE1 1338 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 PDE4DIPQ5VU43 2346 aa9.77□□□□□ -0.85
SF3B3-212ENST00000568539 MYH4Q9Y623 1939 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 PEX10O60683 326 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 ALDH1A1P00352 501 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 HSP90AA1P07900 732 aaKnown RBP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 GJB2P29033 226 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 GCLCP48506 637 aaPredicted RBP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 TAF1CQ15572 869 aaPredicted RBP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 WWC2Q6AWC2 1192 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 HEATR3Q7Z4Q2 680 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 FBXO11Q86XK2 927 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 CPXCR1Q8N123 301 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 WASF1Q92558 559 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 GPKOWQ92917 476 aaPredicted RBP eCLIP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 SHISA4Q96DD7 197 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 AGBL1Q96MI9 1066 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 AIFM3Q96NN9 605 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 ALG1Q9BT22 464 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 AMNQ9BXJ7 453 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 RAVER2Q9HCJ3 691 aaKnown RBP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 BARHL2Q9NY43 387 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 MORF4L1Q9UBU8 362 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 PNMA2Q9UL42 364 aa9.76□□□□□ -0.85
SF3B3-212ENST00000568539 CTDP1Q9Y5B0 961 aaPredicted RBP9.76□□□□□ -0.85
SF3B3-212ENST00000568539 hCG_1984214I3L0E3 225 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 STXBP3O00186 592 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 CA12O43570 354 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 TLR2O60603 784 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 TAL1P17542 331 aaPredicted RBP9.75□□□□□ -0.85
SF3B3-212ENST00000568539 STAT3P40763 770 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 TRAF1Q13077 416 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 CRHR2Q13324 411 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 SNRNP48Q6IEG0 339 aaKnown RBP9.75□□□□□ -0.85
SF3B3-212ENST00000568539 TYW1BQ6NUM6 668 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 ANKRD13CQ8N6S4 541 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 ZNF713Q8N859 430 aaPredicted RBP9.75□□□□□ -0.85
SF3B3-212ENST00000568539 FAM184AQ8NB25 1140 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 COA7Q96BR5 231 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 IPO9Q96P70 1041 aaKnown RBP9.75□□□□□ -0.85
SF3B3-212ENST00000568539 PAGR1Q9BTK6 254 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 CFHR5Q9BXR6 569 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 TEX13BQ9BXU2 312 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 SPATC1LQ9H0A9 340 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 ZFYVE28Q9HCC9 887 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 SH3GLB2Q9NR46 395 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 WBP1LQ9NX94 342 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 CCPG1Q9ULG6 757 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 KIF3AQ9Y496 699 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 RIPK3Q9Y572 518 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 PCDHA1Q9Y5I3 950 aa9.75□□□□□ -0.85
SF3B3-212ENST00000568539 PTPRFP10586 1907 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 A0A0G2JMZ2 1700 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 OPLAHO14841 1288 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 BCRP11274 1271 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 ERVK-9P63128 1117 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 ERVK-24P63145 666 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 PLS1Q14651 629 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 FAM110CQ1W6H9 321 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 Q3C1V9 767 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 USH1GQ495M9 461 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 PPP1R18Q6NYC8 613 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 C17orf99Q6UX52 265 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 RIOX2Q8IUF8 465 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 FAM177A1Q8N128 213 aaPredicted RBP9.74□□□□□ -0.85
SF3B3-212ENST00000568539 GPRC5AQ8NFJ5 357 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 DDX27Q96GQ7 796 aaKnown RBP9.74□□□□□ -0.85
SF3B3-212ENST00000568539 MOV10L1Q9BXT6 1211 aaKnown RBP9.74□□□□□ -0.85
SF3B3-212ENST00000568539 CWC22Q9HCG8 908 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms