RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 C16orf59Q7L2K0 433 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 ABRAQ8N0Z2 381 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 TMEM199Q8N511 208 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 NUP133Q8WUM0 1156 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 STAG1Q8WVM7 1258 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 RUFY2Q8WXA3 655 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 LENG1Q96BZ8 264 aaPredicted RBP16.36■□□□□ 0.21
CLN3-235ENST00000568497 ATG4CQ96DT6 458 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 PPP1R12CQ9BZL4 782 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 TBX21Q9UL17 535 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 RAD50Q92878 1312 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 FLOT1O75955 427 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 FGRP09769 529 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 IMMTQ16891 758 aaKnown RBP16.35■□□□□ 0.21
CLN3-235ENST00000568497 SNX27Q96L92 541 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 MTIF3Q9H2K0 278 aaKnown RBP16.35■□□□□ 0.21
CLN3-235ENST00000568497 SENP2Q9HC62 589 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 GPHNQ9NQX3 736 aaPredicted RBP16.35■□□□□ 0.21
CLN3-235ENST00000568497 HOXC10Q9NYD6 342 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 ZMYM6O95789 1325 aa16.35■□□□□ 0.21
CLN3-235ENST00000568497 MCCP23508 829 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 SLC4A3P48751 1232 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 ACLYP53396 1101 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 COG2Q14746 738 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 PPP2R2DQ66LE6 453 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 SLFN13Q68D06 897 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 KCTD1Q719H9 257 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 TICAM2Q86XR7 235 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 CPVLQ9H3G5 476 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 MROH8Q9H579 483 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 NYAP2Q9P242 653 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 YBX2Q9Y2T7 364 aaKnown RBP16.34■□□□□ 0.21
CLN3-235ENST00000568497 MROH7Q68CQ1 1323 aa16.34■□□□□ 0.21
CLN3-235ENST00000568497 FRMPD2Q68DX3 1309 aaPredicted RBP16.34■□□□□ 0.21
CLN3-235ENST00000568497 XIRP2A4UGR9 3374 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 TTLL1O95922 423 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 FCER1AP12319 257 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 AKR1A1P14550 325 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 ERICH6BQ5W0A0 696 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 TTBK2Q6IQ55 1244 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 RCSD1Q6JBY9 416 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 HERVK_113Q902F9 699 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 MAP4K1Q92918 833 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 VTI1AQ96AJ9 217 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 TMEM47Q9BQJ4 181 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 TSEN34Q9BSV6 310 aaKnown RBP16.33■□□□□ 0.2
CLN3-235ENST00000568497 ZNF287Q9HBT7 754 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 ZSWIM5Q9P217 1185 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 PLIN4Q96Q06 1357 aa16.33■□□□□ 0.2
CLN3-235ENST00000568497 LRRC37A2A6NM11 1700 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 E7EWF7 191 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 SLC27A2O14975 620 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 KIAA1211Q6ZU35 1233 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 MB21D1Q8N884 522 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 KIFC2Q96AC6 838 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 GLT1D1Q96MS3 346 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 LRRC2Q9BYS8 371 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 GOPCQ9HD26 462 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 GPCPD1Q9NPB8 672 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 CTNNA3Q9UI47 895 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 U3KPZ7 1027 aaPredicted RBP16.32■□□□□ 0.2
CLN3-235ENST00000568497 CHD9Q3L8U1 2897 aa16.32■□□□□ 0.2
CLN3-235ENST00000568497 COL11A1P12107 1806 aaPredicted RBP16.31■□□□□ 0.2
CLN3-235ENST00000568497 SYNRGQ9UMZ2 1314 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 GTPBP6O43824 516 aaPredicted RBP16.31■□□□□ 0.2
CLN3-235ENST00000568497 GPR37L1O60883 481 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 ADAMTS4O75173 837 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 DSG3P32926 999 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 SLC16A2P36021 539 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 MRE11P49959 708 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 CREB3L3Q68CJ9 461 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 RAB11FIP4Q86YS3 637 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 TCEANC2Q96MN5 208 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 TINF2Q9BSI4 451 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 C11orf16Q9NQ32 467 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 CNPY2Q9Y2B0 182 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 PARP14Q460N5 1801 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 A0A0G2JMZ2 1700 aa16.31■□□□□ 0.2
CLN3-235ENST00000568497 ZNFX1Q9P2E3 1918 aaKnown RBP16.3■□□□□ 0.2
CLN3-235ENST00000568497 MOXD2PA6NHM9 499 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 WDR46O15213 610 aaKnown RBP16.3■□□□□ 0.2
CLN3-235ENST00000568497 PGK2P07205 417 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 GOLGA8HP0CJ92 632 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 CPA1P15085 419 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 RABGGTBP53611 331 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 ANTXR2P58335 489 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 KCNA10Q16322 511 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 CCDC96Q2M329 555 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 OTOP2Q7RTS6 562 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 RASEFQ8IZ41 740 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 ESR2Q92731 530 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 MKL1Q969V6 931 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 MMP19Q99542 508 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 SH2D4AQ9H788 454 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 IL23AQ9NPF7 189 aa16.3■□□□□ 0.2
CLN3-235ENST00000568497 PRRC2BQ5JSZ5 2229 aaKnown RBP16.29■□□□□ 0.2
CLN3-235ENST00000568497 TMEM232C9JQI7 657 aa16.29■□□□□ 0.2
CLN3-235ENST00000568497 TLR3O15455 904 aaKnown RBP16.29■□□□□ 0.2
CLN3-235ENST00000568497 FGBP02675 491 aa16.29■□□□□ 0.2
CLN3-235ENST00000568497 CYP2C18P33260 490 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms