RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NASPP49321 788 aaPredicted RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 SEPHS1P49903 392 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 AMPD2Q01433 879 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 PPP2R5DQ14738 602 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 CBX2Q14781 532 aaPredicted RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 ZYXQ15942 572 aaKnown RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 RTP2Q5QGT7 225 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 ERICH6BQ5W0A0 696 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 BICRALQ6AI39 1079 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 POMZP3Q6PJE2 187 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 ZC3H14Q6PJT7 736 aaKnown RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 PAQR3Q6TCH7 311 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 METTL16Q86W50 562 aaKnown RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 PPFIBP1Q86W92 1011 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 MZB1Q8WU39 189 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 PTCHD1Q96NR3 888 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 JMJD8Q96S16 334 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 TGIF2Q9GZN2 237 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 ZCCHC4Q9H5U6 513 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 GCM1Q9NP62 436 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 PDLIM7Q9NR12 457 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 MBD1Q9UIS9 605 aaPredicted RBP4.81□□□□□ -1.64
VPS35-207ENST00000568191 FGF10O15520 208 aaPredicted RBP4.8□□□□□ -1.64
VPS35-207ENST00000568191 CYBBP04839 570 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 GJA8P48165 433 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 MAPKAPK2P49137 400 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 HDLBPQ00341 1268 aaKnown RBP4.8□□□□□ -1.64
VPS35-207ENST00000568191 C9orf131Q5VYM1 1079 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 RCSD1Q6JBY9 416 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 CNKSR3Q6P9H4 555 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 NLGN2Q8NFZ4 835 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 FCRL3Q96P31 734 aaPredicted RBP4.8□□□□□ -1.64
VPS35-207ENST00000568191 APBA2Q99767 749 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 CNTD2Q9H8S5 307 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 CAPN10Q9HC96 672 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 TNFRSF12AQ9NP84 129 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 KLHL14Q9P2G3 628 aa4.8□□□□□ -1.64
VPS35-207ENST00000568191 LTBP3Q9NS15 1303 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 A0A1W2PQH9 124 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 ANKRD34BA5PLL1 514 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 NOP56O00567 594 aaKnown RBP4.79□□□□□ -1.64
VPS35-207ENST00000568191 BMP7P18075 431 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 PI3P19957 117 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 AFF3P51826 1226 aaKnown RBP4.79□□□□□ -1.64
VPS35-207ENST00000568191 ZNF143P52747 638 aaPredicted RBP4.79□□□□□ -1.64
VPS35-207ENST00000568191 CASP7P55210 303 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 GRB10Q13322 594 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 NCAPHQ15003 741 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 LILRA6Q6PI73 481 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 VHLLQ6RSH7 139 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 LDHDQ86WU2 507 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 TMEM52Q8NDY8 209 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 ADCY4Q8NFM4 1077 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 USP33Q8TEY7 942 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 RCC1LQ96I51 464 aaKnown RBP4.79□□□□□ -1.64
VPS35-207ENST00000568191 KRTAP4-2Q9BYR5 136 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 PARD6AQ9NPB6 346 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 NUDT5Q9UKK9 219 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 FAN1Q9Y2M0 1017 aa4.79□□□□□ -1.64
VPS35-207ENST00000568191 CCDC9Q9Y3X0 531 aaKnown RBP4.79□□□□□ -1.64
VPS35-207ENST00000568191 C2orf71A6NGG8 1288 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 SRGAP3O43295 1099 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 EPHX1P07099 455 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 INHBBP09529 407 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 PAMP19021 973 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 MVKQ03426 396 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 KIAA1211LQ6NV74 962 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 RPTNQ6XPR3 784 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 TTLL10Q6ZVT0 673 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 FGD4Q96M96 766 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 KLHL25Q9H0H3 589 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 PCDHB10Q9UN67 800 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 BACE2Q9Y5Z0 518 aa4.78□□□□□ -1.64
VPS35-207ENST00000568191 NPHP3-ACAD11A0A0J9YXS1 232 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 F8W031 263 aaPredicted RBP4.77□□□□□ -1.65
VPS35-207ENST00000568191 AURKAO14965 403 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 CBFA2T2O43439 604 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 NPHS1O60500 1241 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 BUB1BO60566 1050 aaPredicted RBP4.77□□□□□ -1.65
VPS35-207ENST00000568191 EFEMP2O95967 443 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 SSBP05455 408 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS35-207ENST00000568191 IFNGR1P15260 489 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 CDR1P51861 262 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 EPHB3P54753 998 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 CTSWP56202 376 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 TRIM26Q12899 539 aaPredicted RBP4.77□□□□□ -1.65
VPS35-207ENST00000568191 SSPNQ14714 243 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 KIR3DS1Q14943 382 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 DPY19L1Q2PZI1 675 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 TNNI3KQ59H18 835 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 SP8Q8IXZ3 490 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 ARHGEF39Q8N4T4 335 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 LZTR1Q8N653 840 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 PPP1R14AQ96A00 147 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 ANAPC16Q96DE5 110 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 SHDQ96IW2 340 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 AKT3Q9Y243 479 aa4.77□□□□□ -1.65
VPS35-207ENST00000568191 STXBP3O00186 592 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 VAMP4O75379 141 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 ZBTB7AO95365 584 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms