RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GPATCH4Q5T3I0 446 aaKnown RBP22.87■■□□□ 1.25
CLN3-230ENST00000568076 NELFBQ8WX92 580 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 MTMR8Q96EF0 704 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 MTMR9Q96QG7 549 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 MMTAG2Q9BU76 263 aaKnown RBP22.87■■□□□ 1.25
CLN3-230ENST00000568076 SERPINA10Q9UK55 444 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 MAPK8IP1Q9UQF2 711 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 USP17L10C9JJH3 530 aa22.86■■□□□ 1.25
CLN3-230ENST00000568076 RRP9O43818 475 aaKnown RBP22.86■■□□□ 1.25
CLN3-230ENST00000568076 EZH2Q15910 746 aaKnown RBP22.86■■□□□ 1.25
CLN3-230ENST00000568076 KMT5BQ4FZB7 885 aa22.86■■□□□ 1.25
CLN3-230ENST00000568076 PI4KBQ9UBF8 816 aa22.86■■□□□ 1.25
CLN3-230ENST00000568076 GOLGB1Q14789 3259 aaKnown RBP22.86■■□□□ 1.25
CLN3-230ENST00000568076 SLC37A4O43826 429 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 KCNB1Q14721 858 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 PPP1R18Q6NYC8 613 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 IGSF22Q8N9C0 903 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 RIC8AQ9NPQ8 531 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 TDP2O95551 362 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 MYL1P05976 194 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 EEF2P13639 858 aaKnown RBP22.85■■□□□ 1.25
CLN3-230ENST00000568076 CLK2P49760 499 aaKnown RBP22.85■■□□□ 1.25
CLN3-230ENST00000568076 HSP90AA2PQ14568 343 aaPredicted RBP22.85■■□□□ 1.25
CLN3-230ENST00000568076 UBE2SQ16763 222 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 CERKLQ49MI3 558 aaPredicted RBP22.85■■□□□ 1.25
CLN3-230ENST00000568076 ADSSL1Q8N142 457 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 CUEDC2Q9H467 287 aa22.85■■□□□ 1.25
CLN3-230ENST00000568076 ZBTB5O15062 677 aa22.84■■□□□ 1.25
CLN3-230ENST00000568076 TATDN1Q6P1N9 297 aa22.84■■□□□ 1.25
CLN3-230ENST00000568076 SIAH1Q8IUQ4 282 aa22.84■■□□□ 1.25
CLN3-230ENST00000568076 MKL1Q969V6 931 aa22.84■■□□□ 1.25
CLN3-230ENST00000568076 CTAGE1Q96RT6 745 aa22.84■■□□□ 1.25
CLN3-230ENST00000568076 BAG1Q99933 345 aaPredicted RBP22.84■■□□□ 1.25
CLN3-230ENST00000568076 YDJCA8MPS7 323 aa22.83■■□□□ 1.25
CLN3-230ENST00000568076 NPM3O75607 178 aaKnown RBP22.83■■□□□ 1.25
CLN3-230ENST00000568076 RHOBTB3O94955 611 aa22.83■■□□□ 1.25
CLN3-230ENST00000568076 TXKP42681 527 aa22.83■■□□□ 1.25
CLN3-230ENST00000568076 KRT31Q15323 416 aa22.83■■□□□ 1.25
CLN3-230ENST00000568076 ZSCAN29Q8IWY8 852 aaPredicted RBP22.83■■□□□ 1.25
CLN3-230ENST00000568076 MAGEF1Q9HAY2 307 aa22.83■■□□□ 1.25
CLN3-230ENST00000568076 LIMA1Q9UHB6 759 aaKnown RBP22.83■■□□□ 1.25
CLN3-230ENST00000568076 LRRC10BA6NIK2 292 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 KIF2AO00139 706 aaPredicted RBP22.83■■□□□ 1.24
CLN3-230ENST00000568076 ARHGAP6O43182 974 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.24
CLN3-230ENST00000568076 CALCRLQ16602 461 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 PPP4R3BQ5MIZ7 849 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 CAMKK2Q96RR4 588 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 TDRD3Q9H7E2 651 aaKnown RBP22.83■■□□□ 1.24
CLN3-230ENST00000568076 NYAP2Q9P242 653 aa22.83■■□□□ 1.24
CLN3-230ENST00000568076 PMS1P54277 932 aaKnown RBP22.82■■□□□ 1.24
CLN3-230ENST00000568076 REXO1L1PQ8IX06 675 aa22.82■■□□□ 1.24
CLN3-230ENST00000568076 TRIM9Q9C026 710 aa22.82■■□□□ 1.24
CLN3-230ENST00000568076 KANSL2Q9H9L4 492 aa22.82■■□□□ 1.24
CLN3-230ENST00000568076 TRIM49BA6NDI0 452 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 STX10O60499 249 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 CCT6AP40227 531 aaKnown RBP22.81■■□□□ 1.24
CLN3-230ENST00000568076 TNNI2P48788 182 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 SEPT2Q15019 361 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 FCHSD1Q86WN1 690 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 GIMAP8Q8ND71 665 aaPredicted RBP22.81■■□□□ 1.24
CLN3-230ENST00000568076 KIF18AQ8NI77 898 aa22.81■■□□□ 1.24
CLN3-230ENST00000568076 FXR2P51116 673 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLN3-230ENST00000568076 GDF11O95390 407 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 RBL2Q08999 1139 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 FILIP1LQ4L180 1135 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 TCP11X2Q5H9J9 407 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 IRF2BP1Q8IU81 584 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 CUL5Q93034 780 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 PRMT6Q96LA8 375 aaPredicted RBP22.8■■□□□ 1.24
CLN3-230ENST00000568076 C7orf25Q9BPX7 421 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 STK32BQ9NY57 414 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 KCNJ18B7U540 433 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 AKR1B15C9JRZ8 316 aaPredicted RBP22.8■■□□□ 1.24
CLN3-230ENST00000568076 C21orf2O43822 256 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 RAD21O60216 631 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 SLC1A4P43007 532 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 GRB10Q13322 594 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 KCNJ12Q14500 433 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 QRICH1Q2TAL8 776 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 SLFN13Q68D06 897 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 DCAF4Q8WV16 495 aa22.8■■□□□ 1.24
CLN3-230ENST00000568076 CCP110O43303 1012 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 PPIP5K2O43314 1243 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 COPB1P53618 953 aaKnown RBP22.79■■□□□ 1.24
CLN3-230ENST00000568076 JAG1P78504 1218 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 ICA1Q05084 483 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 SPAG1Q07617 926 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 SEMA3FQ13275 785 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 PPP4R3AQ6IN85 833 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 SYT10Q6XYQ8 523 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 PNMA5Q96PV4 448 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 TRIM34Q9BYJ4 488 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 PDGFDQ9GZP0 370 aaPredicted RBP22.79■■□□□ 1.24
CLN3-230ENST00000568076 PSTPIP2Q9H939 334 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 LRWD1Q9UFC0 647 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 PPP2R2CQ9Y2T4 447 aa22.79■■□□□ 1.24
CLN3-230ENST00000568076 ATRNL1Q5VV63 1379 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 H7C1D1 291 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 MRPL12P52815 198 aaKnown RBP22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms