RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GNPTABQ3T906 1256 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 CWF19L1Q69YN2 538 aaKnown RBP6.65□□□□□ -1.34
VPS35-205ENST00000563984 VPS37DQ86XT2 251 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 IRF2BP1Q8IU81 584 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 HHIPL1Q96JK4 782 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 TMPRSS5Q9H3S3 457 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 CHMP4BQ9H444 224 aaKnown RBP6.65□□□□□ -1.34
VPS35-205ENST00000563984 ZCCHC4Q9H5U6 513 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 FHOD1Q9Y613 1164 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 USP2O75604 605 aaPredicted RBP6.64□□□□□ -1.35
VPS35-205ENST00000563984 NOP2P46087 812 aaKnown RBP6.64□□□□□ -1.35
VPS35-205ENST00000563984 ZNF445P59923 1031 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 CRTC3Q6UUV7 619 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 ZPBP2Q6X784 338 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 CEP128Q6ZU80 1094 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 SIRT2Q8IXJ6 389 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 ZNF622Q969S3 477 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS35-205ENST00000563984 CDADC1Q9BWV3 514 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 CAPN10Q9HC96 672 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 ZNF451Q9Y4E5 1061 aa6.64□□□□□ -1.35
VPS35-205ENST00000563984 NOTOA8MTQ0 251 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 FADS2P1A8MWK0 482 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 RTP1P59025 263 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 SLC7A5Q01650 507 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 GNL2Q13823 731 aaKnown RBP6.63□□□□□ -1.35
VPS35-205ENST00000563984 PPP2R5EQ16537 467 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 SKOR2Q2VWA4 1001 aaPredicted RBP6.63□□□□□ -1.35
VPS35-205ENST00000563984 ZNF605Q86T29 641 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 NLRX1Q86UT6 975 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 KCNN1Q92952 543 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 BRF1Q92994 677 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 SHISA4Q96DD7 197 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 INTS4Q96HW7 963 aaKnown RBP6.63□□□□□ -1.35
VPS35-205ENST00000563984 KCNC2Q96PR1 638 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 HAUS7Q99871 368 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 CRTAC1Q9NQ79 661 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 FAM86C1Q9NVL1 165 aa6.63□□□□□ -1.35
VPS35-205ENST00000563984 SF3B6Q9Y3B4 125 aaKnown RBP6.63□□□□□ -1.35
VPS35-205ENST00000563984 A0A1W2PQ45 241 aaPredicted RBP6.62□□□□□ -1.35
VPS35-205ENST00000563984 A0A1W2PQY0 241 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 WTIPA6NIX2 430 aaPredicted RBP6.62□□□□□ -1.35
VPS35-205ENST00000563984 CBFA2T2O43439 604 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 POU4F1Q01851 419 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 RTP2Q5QGT7 225 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 HEATR6Q6AI08 1181 aaKnown RBP6.62□□□□□ -1.35
VPS35-205ENST00000563984 GALNT18Q6P9A2 607 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 FIBCD1Q8N539 461 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 SLC26A8Q96RN1 970 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 SLC12A9Q9BXP2 914 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 GBP3Q9H0R5 595 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 AP5S1Q9NUS5 200 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 ERVK13-1Q9NX77 482 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 WHRNQ9P202 907 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 KCNG1Q9UIX4 513 aa6.62□□□□□ -1.35
VPS35-205ENST00000563984 DIS3Q9Y2L1 958 aaKnown RBP6.62□□□□□ -1.35
VPS35-205ENST00000563984 H0Y8X5 98 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 PDE6BP35913 854 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 NFIXQ14938 502 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 PRRT2Q7Z6L0 340 aaPredicted RBP6.61□□□□□ -1.35
VPS35-205ENST00000563984 ANP32BQ92688 251 aaKnown RBP6.61□□□□□ -1.35
VPS35-205ENST00000563984 MCOLN1Q9GZU1 580 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 KLHL25Q9H0H3 589 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 NOL6Q9H6R4 1146 aaKnown RBP6.61□□□□□ -1.35
VPS35-205ENST00000563984 PCDHB10Q9UN67 800 aa6.61□□□□□ -1.35
VPS35-205ENST00000563984 LOC102724159A0A0B4J2E5 919 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 PPM1BO75688 479 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 EFEMP2O95967 443 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 GSTM1P09488 218 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 PNLIPP16233 465 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 FAM50AQ14320 339 aaKnown RBP6.6□□□□□ -1.35
VPS35-205ENST00000563984 PWP2Q15269 919 aaKnown RBP6.6□□□□□ -1.35
VPS35-205ENST00000563984 SLCO6A1Q86UG4 719 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 TMTC2Q8N394 836 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 FAM169BQ8N8A8 192 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 KLHL6Q8WZ60 621 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 ANAPC16Q96DE5 110 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 SGPP1Q9BX95 441 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 ZNF552Q9H707 407 aaPredicted RBP6.6□□□□□ -1.35
VPS35-205ENST00000563984 RIPOR2Q9Y4F9 1068 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 LAS1LQ9Y4W2 734 aaKnown RBP6.6□□□□□ -1.35
VPS35-205ENST00000563984 TAF6LQ9Y6J9 622 aa6.6□□□□□ -1.35
VPS35-205ENST00000563984 CADPSQ9ULU8 1353 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 MYOCOSA0A1B0GUC4 107 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 OR14I1A6ND48 311 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 PEX10O60683 326 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 EPHX1P07099 455 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 HSF5Q4G112 596 aaPredicted RBP6.59□□□□□ -1.35
VPS35-205ENST00000563984 HLA-DQA1Q5Y7H0 255 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 CYP2R1Q6VVX0 501 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 NOL8Q76FK4 1167 aaKnown RBP6.59□□□□□ -1.35
VPS35-205ENST00000563984 ADAT2Q7Z6V5 191 aaKnown RBP6.59□□□□□ -1.35
VPS35-205ENST00000563984 ANKRD13AQ8IZ07 590 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 NAT16Q8N8M0 369 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 TMEM52Q8NDY8 209 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 CXorf38Q8TB03 319 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 FCRL3Q96P31 734 aaPredicted RBP6.59□□□□□ -1.35
VPS35-205ENST00000563984 RTEL1Q9NZ71 1219 aa6.59□□□□□ -1.35
VPS35-205ENST00000563984 GPR55Q9Y2T6 319 aaPredicted RBP6.59□□□□□ -1.35
VPS35-205ENST00000563984 SSBP05455 408 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS35-205ENST00000563984 ARL4AP40617 200 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms