RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CCDC174Q6PII3 467 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 ERC1Q8IUD2 1116 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 PRPF38AQ8NAV1 312 aaKnown RBP12.46□□□□□ -0.41
SF3B3-204ENST00000563739 PURBQ96QR8 312 aaKnown RBP12.46□□□□□ -0.41
SF3B3-204ENST00000563739 HAUS7Q99871 368 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 BOLA2Q9H3K6 86 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 ARIH1Q9Y4X5 557 aaPredicted RBP12.46□□□□□ -0.41
SF3B3-204ENST00000563739 TRIP12Q14669 1992 aaPredicted RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 ZNF318Q5VUA4 2279 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 FAM86C2PA6NEL3 165 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 ATP5JP18859 108 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 TAP1Q03518 808 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 GPNMBQ14956 572 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 FSCN1Q16658 493 aaKnown RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 SBK1Q52WX2 424 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 FBXO16Q8IX29 292 aaPredicted RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 LRRC47Q8N1G4 583 aaKnown RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 PPP1R13LQ8WUF5 828 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 CTAGE1Q96RT6 745 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 STRBPQ96SI9 672 aaKnown RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 C1QTNF1Q9BXJ1 281 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 ALDH8A1Q9H2A2 487 aaPredicted RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 CERS4Q9HA82 394 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 TRMT13Q9NUP7 481 aaKnown RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 SLC4A4Q9Y6R1 1079 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 U3KPZ7 1027 aaPredicted RBP12.45□□□□□ -0.42
SF3B3-204ENST00000563739 TRIOO75962 3097 aa12.45□□□□□ -0.42
SF3B3-204ENST00000563739 RAD21O60216 631 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 CYP2C9P11712 490 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 ATP2A2P16615 1042 aaKnown RBP12.44□□□□□ -0.42
SF3B3-204ENST00000563739 TNFAIP2Q03169 654 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 TCTN1Q2MV58 587 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 MUM1L1Q5H9M0 696 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 ANKRD35Q8N283 1001 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 CHST13Q8NET6 341 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 PANK1Q8TE04 598 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 MORC4Q8TE76 937 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 MKL1Q969V6 931 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 KIFC2Q96AC6 838 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 CEP95Q96GE4 821 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 HOMER2Q9NSB8 354 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 ARPP21Q9UBL0 812 aaPredicted RBP12.44□□□□□ -0.42
SF3B3-204ENST00000563739 SLC4A7Q9Y6M7 1214 aa12.44□□□□□ -0.42
SF3B3-204ENST00000563739 LCHNA4D1U4 455 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 PRDM1O75626 825 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 SLC4A3P48751 1232 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 OAZ1P54368 228 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 C1QBPQ07021 282 aaKnown RBP12.43□□□□□ -0.42
SF3B3-204ENST00000563739 GRB10Q13322 594 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 STK11IPQ8N1F8 1099 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 GMCL1P1Q8NEA9 526 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 OSBP2Q969R2 916 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 VTI1AQ96AJ9 217 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 KIF1BPQ96EK5 621 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 RNF146Q9NTX7 359 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 MTMR4Q9NYA4 1195 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 CLIP2Q9UDT6 1046 aa12.43□□□□□ -0.42
SF3B3-204ENST00000563739 FOXP2O15409 715 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 DYNC1LI2O43237 492 aaPredicted RBP12.42□□□□□ -0.42
SF3B3-204ENST00000563739 GPR37L1O60883 481 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 ZBED4O75132 1171 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 CABYRO75952 493 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 ACAD9Q9H845 621 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 SPC25Q9HBM1 224 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 FBXO40Q9UH90 709 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 FEM1BQ9UK73 627 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 C5orf42Q9H799 3197 aa12.42□□□□□ -0.42
SF3B3-204ENST00000563739 TNKSO95271 1327 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 ZBBXA8MT70 800 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 SNAP25P60880 206 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 PURAQ00577 322 aaKnown RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 EEPD1Q7L9B9 569 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 TMCO2Q7Z6W1 182 aaPredicted RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 DEFB128Q7Z7B8 93 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 ALYREFQ86V81 257 aaKnown RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 FTSJ3Q8IY81 847 aaKnown RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 CLASRPQ8N2M8 674 aaKnown RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 MTIF3Q9H2K0 278 aaKnown RBP12.41□□□□□ -0.42
SF3B3-204ENST00000563739 CYP39A1Q9NYL5 469 aa12.41□□□□□ -0.42
SF3B3-204ENST00000563739 RBM47A0AV96 593 aaKnown RBP12.4□□□□□ -0.42
SF3B3-204ENST00000563739 M0R2C6 588 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 TMEM67Q5HYA8 995 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 TMEM31Q5JXX7 168 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 HERC6Q8IVU3 1022 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 GDPD5Q8WTR4 605 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 SYNPO2Q9UMS6 1093 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 Q9Y3F1 56 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 MICAL3Q7RTP6 2002 aa12.4□□□□□ -0.42
SF3B3-204ENST00000563739 USP34Q70CQ2 3546 aa12.4□□□□□ -0.43
SF3B3-204ENST00000563739 TMEM232C9JQI7 657 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 PI4K2BG5E9Z4 385 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 PFKMP08237 780 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 IFIT2P09913 472 aaKnown RBP12.39□□□□□ -0.43
SF3B3-204ENST00000563739 BMP3P12645 472 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 SLFN13Q68D06 897 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 GIMAP6Q6P9H5 292 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 RPAP2Q8IXW5 612 aaPredicted RBP12.39□□□□□ -0.43
SF3B3-204ENST00000563739 IL27Q8NEV9 243 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 NEDD1Q8NHV4 660 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 ARNTL2Q8WYA1 636 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms