RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 SCAND2PQ9GZW5 306 aaPredicted RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 POLR3EQ9NVU0 708 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 MYPNQ86TC9 1320 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 SPDYE16A6NNV3 312 aaPredicted RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 WNT7AO00755 349 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 ZBED4O75132 1171 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 GADD45BO75293 160 aaPredicted RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 FDX1P10109 184 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 NASPP49321 788 aaPredicted RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 TRAF1Q13077 416 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 SF3A1Q15459 793 aaKnown RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 JAKMIP3Q5VZ66 844 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 ANO1Q5XXA6 986 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 GPAT2Q6NUI2 795 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 REXO1Q8N1G1 1221 aaKnown RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 CUL5Q93034 780 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 SPATA32Q96LK8 384 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 PSTPIP2Q9H939 334 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 RAVER2Q9HCJ3 691 aaKnown RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 RCOR1Q9UKL0 485 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 AGTPBP1Q9UPW5 1226 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 ELP1O95163 1332 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 ABCB11O95342 1321 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 CCDC194A0A1B0GVG4 234 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 MEIS2O14770 477 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 MRPL12P52815 198 aaKnown RBP11.63□□□□□ -0.55
SMG1-208ENST00000563448 HUNKP57058 714 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 SNAPC2Q13487 334 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 USP17L6PQ6QN14 398 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 FASTKD5Q7L8L6 764 aaKnown RBP11.63□□□□□ -0.55
SMG1-208ENST00000563448 KRT25Q7Z3Z0 450 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 CPXCR1Q8N123 301 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 LINC00301Q8NCQ3 95 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 SMC1BQ8NDV3 1235 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 CCPG1Q9ULG6 757 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 PCDHB6Q9Y5E3 794 aa11.63□□□□□ -0.55
SMG1-208ENST00000563448 YEATS4O95619 227 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 ATP2B1P20020 1258 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 MKRN3Q13064 507 aaKnown RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 PTPAQ15257 358 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 CSPP1Q1MSJ5 1256 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 SPRYD7Q5W111 196 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 POTEEQ6S8J3 1075 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 TBC1D5Q92609 795 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 MS4A4AQ96JQ5 239 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 PGBD1Q96JS3 809 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 GLT8D2Q9H1C3 349 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 HOXC10Q9NYD6 342 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 NOL7Q9UMY1 257 aaKnown RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 MRPL11Q9Y3B7 192 aaKnown RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 CTDP1Q9Y5B0 961 aaPredicted RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 PTMSP20962 102 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 TMEM132BQ14DG7 1078 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 STK38Q15208 465 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 NONOQ15233 471 aaKnown RBP eCLIP11.62□□□□□ -0.55
SMG1-208ENST00000563448 INF2Q27J81 1249 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 TTC38Q5R3I4 469 aa11.62□□□□□ -0.55
SMG1-208ENST00000563448 P2RX7Q99572 595 aaKnown RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 ZNF214Q9UL59 606 aaPredicted RBP11.62□□□□□ -0.55
SMG1-208ENST00000563448 EDIL3O43854 480 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 ZBTB48P10074 688 aaPredicted RBP11.61□□□□□ -0.55
SMG1-208ENST00000563448 TRAPPC10P48553 1259 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 GTF2A2P52657 109 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 OAZ1P54368 228 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 SLC39A14Q15043 492 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 SAPCD2Q86UD0 394 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 CLEC4DQ8WXI8 215 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 ASCC2Q9H1I8 757 aaPredicted RBP11.61□□□□□ -0.55
SMG1-208ENST00000563448 KIAA1217Q5T5P2 1943 aa11.61□□□□□ -0.55
SMG1-208ENST00000563448 PIK3CDO00329 1044 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 ATP2A1O14983 1001 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 SPTLC2O15270 562 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 TOMM70O94826 608 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 CETPP11597 493 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 ALAS1P13196 640 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 ZNF174Q15697 407 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 MUM1L1Q5H9M0 696 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 RASAL3Q86YV0 1011 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 GPT2Q8TD30 523 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 TBCKQ8TEA7 893 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 RIPK3Q9Y572 518 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 PLXNB2O15031 1838 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 PLXNA1Q9UIW2 1896 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 CCL15-CCL14A0A0B4J2E2 113 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 CFBP00751 764 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 OSBPP22059 807 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 HOXA13P31271 388 aaPredicted RBP11.6□□□□□ -0.55
SMG1-208ENST00000563448 IRX3P78415 501 aaPredicted RBP11.6□□□□□ -0.55
SMG1-208ENST00000563448 PABPC4Q13310 644 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMG1-208ENST00000563448 CCL15Q16663 113 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 TPRNQ4KMQ1 711 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 SNRNP48Q6IEG0 339 aaKnown RBP11.6□□□□□ -0.55
SMG1-208ENST00000563448 LBX2Q6XYB7 198 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 BRI3BPQ8WY22 251 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 BTBD7Q9P203 1132 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 PNMA2Q9UL42 364 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 PCDHA7Q9UN72 937 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 TLL2Q9Y6L7 1015 aa11.6□□□□□ -0.55
SMG1-208ENST00000563448 NFIBO00712 420 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms