RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PRKG1Q13976 671 aa20.55■□□□□ 0.88
COMMD4-208ENST00000563220 USP17L6PQ6QN14 398 aa20.55■□□□□ 0.88
COMMD4-208ENST00000563220 FAM160B2Q86V87 743 aa20.55■□□□□ 0.88
COMMD4-208ENST00000563220 WDR18Q9BV38 432 aa20.55■□□□□ 0.88
COMMD4-208ENST00000563220 EMILIN3Q9NT22 766 aa20.55■□□□□ 0.88
COMMD4-208ENST00000563220 VWA3AA6NCI4 1184 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 MTMR2Q13614 643 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 SULF1Q8IWU6 871 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 FAM43AQ8N2R8 423 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 RNF214Q8ND24 703 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 LPAR1Q92633 364 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 ERCC4Q92889 916 aaPredicted RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 PANK2Q9BZ23 570 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 RANBP17Q9H2T7 1088 aaKnown RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 PICK1Q9NRD5 415 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 FAM13BQ9NYF5 915 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 ATAD5Q96QE3 1844 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 CCNT1O60563 726 aaKnown RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 CCDC192P0DO97 292 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 EPHX2P34913 555 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 TYRO3Q06418 890 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 ARL6IP4Q66PJ3 421 aaKnown RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 USP50Q70EL3 339 aaPredicted RBP20.54■□□□□ 0.88
COMMD4-208ENST00000563220 EPSTI1Q96J88 318 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 TIGD1Q96MW7 591 aa20.54■□□□□ 0.88
COMMD4-208ENST00000563220 MEIS2O14770 477 aa20.53■□□□□ 0.88
COMMD4-208ENST00000563220 WDR46O15213 610 aaKnown RBP20.53■□□□□ 0.88
COMMD4-208ENST00000563220 LONRF3Q496Y0 759 aa20.53■□□□□ 0.88
COMMD4-208ENST00000563220 SAMD1Q6SPF0 538 aaPredicted RBP20.53■□□□□ 0.88
COMMD4-208ENST00000563220 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.53■□□□□ 0.88
COMMD4-208ENST00000563220 GLT8D2Q9H1C3 349 aa20.53■□□□□ 0.88
COMMD4-208ENST00000563220 POLR2AP24928 1970 aaKnown RBP20.52■□□□□ 0.88
COMMD4-208ENST00000563220 OPLAHO14841 1288 aa20.52■□□□□ 0.88
COMMD4-208ENST00000563220 CCDC174Q6PII3 467 aa20.52■□□□□ 0.88
COMMD4-208ENST00000563220 KRT26Q7Z3Y9 468 aa20.52■□□□□ 0.88
COMMD4-208ENST00000563220 ZNF280CQ8ND82 737 aa20.52■□□□□ 0.88
COMMD4-208ENST00000563220 ZHX2Q9Y6X8 837 aa20.52■□□□□ 0.88
COMMD4-208ENST00000563220 BACE1P56817 501 aa20.52■□□□□ 0.87
COMMD4-208ENST00000563220 NOL9Q5SY16 702 aaKnown RBP20.52■□□□□ 0.87
COMMD4-208ENST00000563220 SYMPKQ92797 1274 aaKnown RBP20.52■□□□□ 0.87
COMMD4-208ENST00000563220 P2RX7Q99572 595 aaKnown RBP20.52■□□□□ 0.87
COMMD4-208ENST00000563220 AS3MTQ9HBK9 375 aa20.52■□□□□ 0.87
COMMD4-208ENST00000563220 ZC3H4Q9UPT8 1303 aaKnown RBP20.51■□□□□ 0.87
COMMD4-208ENST00000563220 POTECB2RU33 542 aa20.51■□□□□ 0.87
COMMD4-208ENST00000563220 POLR2DO15514 142 aaKnown RBP20.51■□□□□ 0.87
COMMD4-208ENST00000563220 VCAM1P19320 739 aa20.51■□□□□ 0.87
COMMD4-208ENST00000563220 SASS6Q6UVJ0 657 aa20.51■□□□□ 0.87
COMMD4-208ENST00000563220 KRBA2Q6ZNG9 492 aa20.51■□□□□ 0.87
COMMD4-208ENST00000563220 A0A087X0B3 334 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 USP14P54578 494 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.5■□□□□ 0.87
COMMD4-208ENST00000563220 ZC3H15Q8WU90 426 aaKnown RBP20.5■□□□□ 0.87
COMMD4-208ENST00000563220 LAD1O00515 517 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 PDILTQ8N807 584 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 PRPF38AQ8NAV1 312 aaKnown RBP20.5■□□□□ 0.87
COMMD4-208ENST00000563220 SLF1Q9BQI6 1058 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 KIAA1468Q9P260 1216 aa20.5■□□□□ 0.87
COMMD4-208ENST00000563220 NEMFO60524 1076 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 TDP2O95551 362 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 MAP3K9P80192 1104 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 DTHD1Q6ZMT9 781 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 CNNM3Q8NE01 707 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 TAF1DQ9H5J8 278 aaPredicted RBP20.49■□□□□ 0.87
COMMD4-208ENST00000563220 RPAP3Q9H6T3 665 aaPredicted RBP20.49■□□□□ 0.87
COMMD4-208ENST00000563220 SERTAD1Q9UHV2 236 aa20.49■□□□□ 0.87
COMMD4-208ENST00000563220 DOCK1Q14185 1865 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 A0A087WWV3 80 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 LONP1P36776 959 aaKnown RBP20.48■□□□□ 0.87
COMMD4-208ENST00000563220 PRPHP41219 470 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 ORC2Q13416 577 aaPredicted RBP20.48■□□□□ 0.87
COMMD4-208ENST00000563220 POTEDQ86YR6 584 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 TBC1D5Q92609 795 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 ANO3Q9BYT9 981 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 TANGO6Q9C0B7 1094 aa20.48■□□□□ 0.87
COMMD4-208ENST00000563220 SLC37A4O43826 429 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 OR52Z1P0C646 297 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 CDC25AP30304 524 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 HMGCS2P54868 508 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 TRAF1Q13077 416 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 AP3B2Q13367 1082 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 VGLL4Q14135 290 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 ANO6Q4KMQ2 910 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 LDHDQ86WU2 507 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 RTN4Q9NQC3 1192 aaKnown RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 AFG3L2Q9Y4W6 797 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 SNCAIPQ9Y6H5 919 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 ZNF536O15090 1300 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 FOXN1O15353 648 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 ACTN4O43707 911 aaKnown RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 HOXA13P31271 388 aaPredicted RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 MDM2Q00987 491 aaPredicted RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 EAPPQ56P03 285 aaPredicted RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 PPP4R3AQ6IN85 833 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 ELOA2Q8IYF1 753 aaPredicted RBP20.47■□□□□ 0.87
COMMD4-208ENST00000563220 CDCA5Q96FF9 252 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 C12orf42Q96LP6 360 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 AGBL1Q96MI9 1066 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 MTMR9Q96QG7 549 aa20.47■□□□□ 0.87
COMMD4-208ENST00000563220 C19orf81C9J6K1 198 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms