RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 RPAINQ86UA6 219 aa8.41□□□□□ -1.06
TCF4-216ENST00000562680 EPB41L4AQ9HCS5 686 aaPredicted RBP8.41□□□□□ -1.06
TCF4-216ENST00000562680 TMEM63CQ9P1W3 806 aa8.41□□□□□ -1.06
TCF4-216ENST00000562680 IMPACTQ9P2X3 320 aa8.41□□□□□ -1.06
TCF4-216ENST00000562680 SERTAD1Q9UHV2 236 aa8.41□□□□□ -1.06
TCF4-216ENST00000562680 KCTD1Q719H9 257 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 NEK11Q8NG66 645 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 EHD4Q9H223 541 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 TRAF5O00463 557 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 FBXL16Q8N461 479 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 IGDCC4Q8TDY8 1250 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 JPH2Q9BR39 696 aaPredicted RBP8.4□□□□□ -1.06
TCF4-216ENST00000562680 MRIQ9BWK5 157 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 HOXC10Q9NYD6 342 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 TRPM3Q9HCF6 1732 aaPredicted RBP8.4□□□□□ -1.06
TCF4-216ENST00000562680 KRT83P78385 493 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 TTC31Q49AM3 519 aaPredicted RBP8.4□□□□□ -1.06
TCF4-216ENST00000562680 EXOC8Q8IYI6 725 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 RBM46Q8TBY0 533 aaKnown RBP8.4□□□□□ -1.06
TCF4-216ENST00000562680 RIOK1Q9BRS2 568 aaKnown RBP8.4□□□□□ -1.06
TCF4-216ENST00000562680 TCHPQ9BT92 498 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 HOMER2Q9NSB8 354 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 MTMR4Q9NYA4 1195 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 POLLQ9UGP5 575 aa8.4□□□□□ -1.06
TCF4-216ENST00000562680 USP17L10C9JJH3 530 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 DNM2P50570 870 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 HSP90B2PQ58FF3 399 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 CSGALNACT2Q8N6G5 542 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 SLF1Q9BQI6 1058 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 GBP3Q9H0R5 595 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 BCL2L12Q9HB09 334 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 GPHNQ9NQX3 736 aaPredicted RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 ZNF70Q9UC06 446 aaPredicted RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 PCDHB13Q9Y5F0 798 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 COL4A3BPQ9Y5P4 624 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 CLIC4Q9Y696 253 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 CHMP2AO43633 222 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 KIF4AO95239 1232 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 PLEKHA8P1O95397 391 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 CCDC84Q86UT8 332 aaPredicted RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 TBCKQ8TEA7 893 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 CPLX3Q8WVH0 158 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 ATP6V0A1Q93050 837 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 PRIMPOLQ96LW4 560 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 RNF216Q9NWF9 866 aaPredicted RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 IFNKQ9P0W0 207 aa8.4□□□□□ -1.07
TCF4-216ENST00000562680 LARSQ9P2J5 1176 aaKnown RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 LUC7L2Q9Y383 392 aaKnown RBP8.4□□□□□ -1.07
TCF4-216ENST00000562680 SPDYE4A6NLX3 237 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 SLFN14P0C7P3 912 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 EEF2P13639 858 aaKnown RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 ERCC5P28715 1186 aaPredicted RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 CRY2Q49AN0 593 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 TBC1D10BQ4KMP7 808 aaPredicted RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 CCDC186Q7Z3E2 898 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 BARHL2Q9NY43 387 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 BCL9LQ86UU0 1499 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 F5H6K3 240 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 STX10O60499 249 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 KLRC3Q07444 240 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 NBPF20Q3BBV1 942 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 AP1ARQ63HQ0 302 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PRPF38AQ8NAV1 312 aaKnown RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 SLC44A5Q8NCS7 719 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PLIN2Q99541 437 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 ANO3Q9BYT9 981 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 CBX8Q9HC52 389 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PHACTR2O75167 634 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 AKR1B1P15121 316 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 MCM3P25205 808 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PRPHP41219 470 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 STX17P56962 302 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 CHMP4BP1P59074 171 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 STRN3Q13033 797 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 SPICE1Q8N0Z3 855 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PAGR1Q9BTK6 254 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 SPC25Q9HBM1 224 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 CNOT7Q9UIV1 285 aaKnown RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 ZKSCAN5Q9Y2L8 839 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 NFE2L3Q9Y4A8 694 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 C19orf81C9J6K1 198 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 SLC26A4O43511 780 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 GAP43P17677 238 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 LMNB1P20700 586 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 RASA1P20936 1047 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PTPREP23469 700 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 CACNB3P54284 484 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 UBXN1Q04323 297 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 PPP2R3AQ06190 1150 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 FAM160B1Q5W0V3 765 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 LUZP1Q86V48 1076 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 MICALL2Q8IY33 904 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 SYMPKQ92797 1274 aaKnown RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 NUCKS1Q9H1E3 243 aaKnown RBP8.39□□□□□ -1.07
TCF4-216ENST00000562680 CTNND2Q9UQB3 1225 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 RIC1Q4ADV7 1423 aa8.39□□□□□ -1.07
TCF4-216ENST00000562680 GOLGA6L10A6NI86 522 aa8.38□□□□□ -1.07
TCF4-216ENST00000562680 SKILP12757 684 aa8.38□□□□□ -1.07
TCF4-216ENST00000562680 PAFAH1B1P43034 410 aa8.38□□□□□ -1.07
TCF4-216ENST00000562680 WDR46O15213 610 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms