RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 SLC39A14Q15043 492 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 NONOQ15233 471 aaKnown RBP eCLIP15.93■□□□□ 0.145e-7■■□□□ 13.6
CLK3-209ENST00000562670 PTPAQ15257 358 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 KLHL40Q2TBA0 621 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 EARS2Q5JPH6 523 aaKnown RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 FASTKD5Q7L8L6 764 aaKnown RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 JMYQ8N9B5 988 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 REPS2Q8NFH8 660 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 ZNF526Q8TF50 670 aaPredicted RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 CNKSR2Q8WXI2 1034 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 GDPD2Q9HCC8 539 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 TFIP11Q9UBB9 837 aaKnown RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 AGTPBP1Q9UPW5 1226 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 MRPL11Q9Y3B7 192 aaKnown RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 PASKQ96RG2 1323 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 ZBED4O75132 1171 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 ZBTB48P10074 688 aaPredicted RBP15.92■□□□□ 0.14
CLK3-209ENST00000562670 PABPC4Q13310 644 aaKnown RBP eCLIP15.92■□□□□ 0.14
CLK3-209ENST00000562670 SNAPC2Q13487 334 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 MOGSQ13724 837 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 SF3A1Q15459 793 aaKnown RBP15.92■□□□□ 0.14
CLK3-209ENST00000562670 PIK3AP1Q6ZUJ8 805 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 MB21D1Q8N884 522 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 SLC10A4Q96EP9 437 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 FTOQ9C0B1 505 aaKnown RBP eCLIP15.92■□□□□ 0.14
CLK3-209ENST00000562670 ZNF408Q9H9D4 720 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 GPBP1L1Q9HC44 474 aaPredicted RBP15.92■□□□□ 0.14
CLK3-209ENST00000562670 HOXC10Q9NYD6 342 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 SLC45A1Q9Y2W3 748 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 CLIC4Q9Y696 253 aa15.92■□□□□ 0.14
CLK3-209ENST00000562670 FAM205CA6NFA0 338 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 SPDYE16A6NNV3 312 aaPredicted RBP15.91■□□□□ 0.14
CLK3-209ENST00000562670 MEIS2O14770 477 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 OPLAHO14841 1288 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 ADAMTS3O15072 1205 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 SPTLC2O15270 562 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 FOSP01100 380 aaPredicted RBP15.91■□□□□ 0.14
CLK3-209ENST00000562670 GJA5P36382 358 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 STK38Q15208 465 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 TTC38Q5R3I4 469 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 CST9Q5W186 159 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 WNK4Q96J92 1243 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 MAP3K20Q9NYL2 800 aaKnown RBP15.91■□□□□ 0.14
CLK3-209ENST00000562670 CCPG1Q9ULG6 757 aa15.91■□□□□ 0.14
CLK3-209ENST00000562670 A0A1W2PQ27 194 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 A0A1W2PQ64 194 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 A0A1W2PQD8 194 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 KIF3CO14782 793 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 TRAK2O60296 914 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 FMR1Q06787 632 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLK3-209ENST00000562670 TKFCQ3LXA3 575 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 USH1GQ495M9 461 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 CCDC174Q6PII3 467 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 NEK8Q86SG6 692 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 RASGRP4Q8TDF6 673 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 GTF3C2Q8WUA4 911 aaPredicted RBP15.9■□□□□ 0.14
CLK3-209ENST00000562670 ATG4CQ96DT6 458 aa15.9■□□□□ 0.14
CLK3-209ENST00000562670 NAP1L4Q99733 375 aaKnown RBP15.9■□□□□ 0.14
CLK3-209ENST00000562670 ZNF214Q9UL59 606 aaPredicted RBP15.9■□□□□ 0.14
CLK3-209ENST00000562670 LAD1O00515 517 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 GTF2A2P52657 109 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 SNAP25P60880 206 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 NOM1Q5C9Z4 860 aaKnown RBP15.89■□□□□ 0.13
CLK3-209ENST00000562670 TREML2Q5T2D2 321 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 MOXD1Q6UVY6 613 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 MCF2L2Q86YR7 1114 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 SMC1BQ8NDV3 1235 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 TEX13BQ9BXU2 312 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 PCDHB6Q9Y5E3 794 aa15.89■□□□□ 0.13
CLK3-209ENST00000562670 DDX49Q9Y6V7 483 aaKnown RBP15.89■□□□□ 0.13
CLK3-209ENST00000562670 COL11A1P12107 1806 aaPredicted RBP15.89■□□□□ 0.13
CLK3-209ENST00000562670 CETPP11597 493 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 GCFC2P16383 781 aaKnown RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 HSD17B4P51659 736 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 ATP2C1P98194 919 aaPredicted RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 CEBPZQ03701 1054 aaKnown RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 SPRYD7Q5W111 196 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 ARL6IP4Q66PJ3 421 aaKnown RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 ADALQ6DHV7 355 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 GADL1Q6ZQY3 521 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 GPT2Q8TD30 523 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 TBCKQ8TEA7 893 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 CRYGNQ8WXF5 182 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 PGBD1Q96JS3 809 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 BIN2Q9UBW5 565 aaPredicted RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 PNMA3Q9UL41 463 aa15.88■□□□□ 0.13
CLK3-209ENST00000562670 CTDP1Q9Y5B0 961 aaPredicted RBP15.88■□□□□ 0.13
CLK3-209ENST00000562670 GOLGA6L4A6NEF3 574 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 GCOM1H8Y6P7 765 aaPredicted RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 CUTAO60888 179 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 GADD45BO75293 160 aaPredicted RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 POLR2MP0CAP2 368 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 PTPREP23469 700 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 COPB2P35606 906 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 SREBF1P36956 1147 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 ME1P48163 572 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 IRX3P78415 501 aaPredicted RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 NBR1Q14596 966 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 UBE2SQ16763 222 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 INF2Q27J81 1249 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms