RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 TM9SF2Q99805 663 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 SLKQ9H2G2 1235 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-210ENST00000561258 TMX1Q9H3N1 280 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 ZNF281Q9Y2X9 895 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 OR14I1A6ND48 311 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 DIAPH1O60610 1272 aaKnown RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 DDAH1O94760 285 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 PI3P19957 117 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 RPL10P27635 214 aaKnown RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 ANAPC15P60006 121 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 MRM1Q6IN84 353 aaKnown RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 C6orf15Q6UXA7 325 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 C16orf86Q6ZW13 317 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 NLRX1Q86UT6 975 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 FAM178BQ8IXR5 827 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 ST13P5Q8NFI4 369 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 ZNF669Q96BR6 464 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-210ENST00000561258 CCDC74BQ96LY2 380 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 ASPNQ9BXN1 380 aa7.05□□□□□ -1.28
VPS13C-210ENST00000561258 RFXAPO00287 272 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 PPP1R12AO14974 1030 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-210ENST00000561258 DNAJA2O60884 412 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 USP2O75604 605 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-210ENST00000561258 GYS2P54840 703 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 SRSF3P84103 164 aaKnown RBP7.04□□□□□ -1.28
VPS13C-210ENST00000561258 TKFCQ3LXA3 575 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 SPATC1Q76KD6 591 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 KIF2CQ99661 725 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 FEZ1Q99689 392 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 MBD1Q9UIS9 605 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-210ENST00000561258 ZMYM5Q9UJ78 669 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 JAG2Q9Y219 1238 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 PTCH2Q9Y6C5 1203 aa7.04□□□□□ -1.28
VPS13C-210ENST00000561258 CC2D2AQ9P2K1 1620 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 ACRP10323 421 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 SDHBP21912 280 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 EPHB3P54753 998 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 NFIXQ14938 502 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 OVOS1Q6IE37 1185 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 RPUSD2Q8IZ73 545 aaKnown RBP7.03□□□□□ -1.28
VPS13C-210ENST00000561258 USHBP1Q8N6Y0 703 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 VWCEQ96DN2 955 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 GMIPQ9P107 970 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 PFDN2Q9UHV9 154 aa7.03□□□□□ -1.28
VPS13C-210ENST00000561258 KDM2BQ8NHM5 1336 aa7.02□□□□□ -1.28
VPS13C-210ENST00000561258 SSRP1Q08945 709 aaKnown RBP7.02□□□□□ -1.29
VPS13C-210ENST00000561258 WAPLQ7Z5K2 1190 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 TMEM151BQ8IW70 566 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 PHACTR4Q8IZ21 702 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 SIGLEC10Q96LC7 697 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 FOXP3Q9BZS1 431 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 SLC12A7Q9Y666 1083 aa7.02□□□□□ -1.29
VPS13C-210ENST00000561258 SLC22A31A6NKX4 558 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 MARCH6O60337 910 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 NME1P15531 152 aaKnown RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 SYN1P17600 705 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 AMPD3Q01432 767 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 NMIQ13287 307 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 ZYXQ15942 572 aaKnown RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 INTS3Q68E01 1043 aaKnown RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 ZPBP2Q6X784 338 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 DACT3Q96B18 629 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 ATG4CQ96DT6 458 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 HDAC8Q9BY41 377 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 XYLT2Q9H1B5 865 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 CNTD2Q9H8S5 307 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 METTL14Q9HCE5 456 aaKnown RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 EPB41L4AQ9HCS5 686 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-210ENST00000561258 SIRT5Q9NXA8 310 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 IRAK3Q9Y616 596 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 LTBP3Q9NS15 1303 aa7.01□□□□□ -1.29
VPS13C-210ENST00000561258 OTOL1A6NHN0 477 aaPredicted RBP7□□□□□ -1.29
VPS13C-210ENST00000561258 TNFRSF10CO14798 259 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 NRDCO43847 1150 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 VIPR1P32241 457 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 GBP1P32455 592 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 MASP1P48740 699 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 MLECQ14165 292 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 NCAPHQ15003 741 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 SLC14A2Q15849 920 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 VMACQ2NL98 169 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 TAF7LQ5H9L4 462 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 CDCP2Q5VXM1 449 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 UNC5AQ6ZN44 842 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 RNF111Q6ZNA4 994 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 CEP128Q6ZU80 1094 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 EEPD1Q7L9B9 569 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 NLRC3Q7RTR2 1065 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 SYNPOQ8N3V7 929 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 SYTL5Q8TDW5 730 aaPredicted RBP7□□□□□ -1.29
VPS13C-210ENST00000561258 TCTN2Q96GX1 697 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 MAP6Q96JE9 813 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 ASCC2Q9H1I8 757 aaPredicted RBP7□□□□□ -1.29
VPS13C-210ENST00000561258 CNNM2Q9H8M5 875 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 RTEL1Q9NZ71 1219 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 KLHL42Q9P2K6 505 aa7□□□□□ -1.29
VPS13C-210ENST00000561258 CUX2O14529 1486 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 TMEM82A0PJX8 343 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 FKTNO75072 461 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 VIL1P09327 827 aaKnown RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms