RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF341Q9BYN7 854 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 GLIS2Q9BZE0 524 aaPredicted RBP14.41□□□□□ -0.1
USP3-213ENST00000559711 PPP2R3BQ9Y5P8 575 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 NEMFO60524 1076 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 OR52Z1P0C646 297 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 PNOCQ13519 176 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 PPP4R3AQ6IN85 833 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 C11orf57Q6ZUT1 292 aaPredicted RBP14.4□□□□□ -0.1
USP3-213ENST00000559711 SH3RF1Q7Z6J0 888 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 LUZP1Q86V48 1076 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 KIAA1683Q9H0B3 1180 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 FEM1BQ9UK73 627 aa14.4□□□□□ -0.1
USP3-213ENST00000559711 MEIS2O14770 477 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 DDNO94850 711 aaPredicted RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 SNAP25P60880 206 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 POSTNQ15063 836 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 ZRSR1Q15695 479 aaKnown RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 NT5DC1Q5TFE4 455 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 CCDC84Q86UT8 332 aaPredicted RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 PDILTQ8N807 584 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 LPAR1Q92633 364 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 RANBP17Q9H2T7 1088 aaKnown RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 GGA3Q9NZ52 723 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 RNF181Q9P0P0 153 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 PCDHA5Q9Y5H7 936 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 PITPNM2Q9BZ72 1349 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L15C9J2P7 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L13C9JLJ4 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L11C9JVI0 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L18D6R9N7 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L22D6RA61 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L17D6RBQ6 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L19D6RCP7 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L20D6RJB6 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 FOXN1O15353 648 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 INPP5BP32019 993 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 SARSP49591 514 aaKnown RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L24Q0WX57 530 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 AP3B2Q13367 1082 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 E2F4Q16254 413 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 USP17L6PQ6QN14 398 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 CEP57L1Q8IYX8 460 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 IQUBQ8NA54 791 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 SPATA20Q8TB22 786 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 DHX58Q96C10 678 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 CCDC34Q96HJ3 373 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 AK8Q96MA6 479 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 MTMR9Q96QG7 549 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 BPIFA3Q9BQP9 254 aa14.39□□□□□ -0.11
USP3-213ENST00000559711 NAT10Q9H0A0 1025 aaKnown RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 ADARB2Q9NS39 739 aaKnown RBP14.39□□□□□ -0.11
USP3-213ENST00000559711 A0A087WWV3 80 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 WDR46O15213 610 aaKnown RBP14.38□□□□□ -0.11
USP3-213ENST00000559711 GCFC2P16383 781 aaKnown RBP14.38□□□□□ -0.11
USP3-213ENST00000559711 USP11P51784 963 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 ZYXQ15942 572 aaKnown RBP14.38□□□□□ -0.11
USP3-213ENST00000559711 DPCR1Q3MIW9 517 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 SCYL3Q8IZE3 742 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 FEZ1Q99689 392 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 NAP1L4Q99733 375 aaKnown RBP14.38□□□□□ -0.11
USP3-213ENST00000559711 WDR18Q9BV38 432 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 CCSER1Q9C0I3 900 aa14.38□□□□□ -0.11
USP3-213ENST00000559711 PIK3CDO00329 1044 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 OPLAHO14841 1288 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 FOSP01100 380 aaPredicted RBP14.37□□□□□ -0.11
USP3-213ENST00000559711 TXLNAP40222 546 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 C9orf131Q5VYM1 1079 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 CRYGNQ8WXF5 182 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 PAGE5Q96GU1 130 aa14.37□□□□□ -0.11
USP3-213ENST00000559711 DICER1Q9UPY3 1922 aaKnown RBP14.37□□□□□ -0.11
USP3-213ENST00000559711 CYP3A7-CYP3A51PA0A087WV96 503 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 BIN1O00499 593 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 AP5Z1O43299 807 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 TDP2O95551 362 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 ADCY5O95622 1261 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 CYP3A7P24462 503 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 LMOD1P29536 600 aaPredicted RBP14.36□□□□□ -0.11
USP3-213ENST00000559711 UTRNP46939 3433 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 SUPT20HL1Q3ZLR7 823 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 USH1GQ495M9 461 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 PRAMEF18Q5VWM3 479 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 PDXDC2PQ6P474 469 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 DHX40Q8IX18 779 aaKnown RBP14.36□□□□□ -0.11
USP3-213ENST00000559711 IGSF22Q8N9C0 903 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 KIFC2Q96AC6 838 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 KLRG1Q96E93 195 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 ANO3Q9BYT9 981 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 SLC37A4O43826 429 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 PRR29P0C7W0 189 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 UBA7P41226 1012 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 FXR2P51116 673 aaKnown RBP eCLIP14.36□□□□□ -0.11
USP3-213ENST00000559711 USP14P54578 494 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 CALCRLQ16602 461 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 MOXD1Q6UVY6 613 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 GRAMD1CQ8IYS0 662 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 TRIML1Q8N9V2 468 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 SMARCE1Q969G3 411 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 MBOAT7Q96N66 472 aa14.36□□□□□ -0.11
USP3-213ENST00000559711 WRNIP1Q96S55 665 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms