RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 GPR142Q7Z601 462 aa11.8□□□□□ -0.52
SPG11-212ENST00000558790 USP6NLQ92738 828 aa11.8□□□□□ -0.52
SPG11-212ENST00000558790 FPGT-TNNI3KV9GXZ4 949 aa11.8□□□□□ -0.52
SPG11-212ENST00000558790 SMCHD1A6NHR9 2005 aa11.8□□□□□ -0.52
SPG11-212ENST00000558790 LILRA1O75019 489 aa11.79□□□□□ -0.52
SPG11-212ENST00000558790 RGS2P41220 211 aa11.79□□□□□ -0.52
SPG11-212ENST00000558790 DYNLL1P63167 89 aaKnown RBP11.79□□□□□ -0.52
SPG11-212ENST00000558790 LRRC26Q2I0M4 334 aa11.79□□□□□ -0.52
SPG11-212ENST00000558790 ATF7IPQ6VMQ6 1270 aa11.79□□□□□ -0.52
SPG11-212ENST00000558790 GTF3C2Q8WUA4 911 aaPredicted RBP11.79□□□□□ -0.52
SPG11-212ENST00000558790 KLF16Q9BXK1 252 aaPredicted RBP11.79□□□□□ -0.52
SPG11-212ENST00000558790 PIH1D3Q9NQM4 214 aaKnown RBP11.79□□□□□ -0.52
SPG11-212ENST00000558790 PGPEP1Q9NXJ5 209 aa11.79□□□□□ -0.52
SPG11-212ENST00000558790 CHD7Q9P2D1 2997 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 BCAR3O75815 825 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 CNMDO75829 334 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 GH2P01242 217 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 HLA-DOAP06340 250 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 TIMP2P16035 220 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 ZAP70P43403 619 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 CBLBQ13191 982 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 ZYXQ15942 572 aaKnown RBP11.78□□□□□ -0.52
SPG11-212ENST00000558790 CCDC158Q5M9N0 1113 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 PLEKHH3Q7Z736 793 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 FOXP4Q8IVH2 680 aaPredicted RBP11.78□□□□□ -0.52
SPG11-212ENST00000558790 FRAT1Q92837 279 aaPredicted RBP11.78□□□□□ -0.52
SPG11-212ENST00000558790 PBXIP1Q96AQ6 731 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 SNX27Q96L92 541 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 FEZ1Q99689 392 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 GPR108Q9NPR9 543 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 GINM1Q9NU53 330 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 TLR7Q9NYK1 1049 aaKnown RBP11.78□□□□□ -0.52
SPG11-212ENST00000558790 NOD1Q9Y239 953 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 SYNGAP1Q96PV0 1343 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 MYO9BQ13459 2157 aa11.78□□□□□ -0.52
SPG11-212ENST00000558790 IPO8O15397 1037 aaKnown RBP11.77□□□□□ -0.53
SPG11-212ENST00000558790 ADD1P35611 737 aaKnown RBP11.77□□□□□ -0.53
SPG11-212ENST00000558790 OS9Q13438 667 aaPredicted RBP11.77□□□□□ -0.53
SPG11-212ENST00000558790 CCAR1Q8IX12 1150 aaKnown RBP11.77□□□□□ -0.53
SPG11-212ENST00000558790 TMEM57Q8N5G2 664 aa11.77□□□□□ -0.53
SPG11-212ENST00000558790 MIGA1Q8NAN2 632 aa11.77□□□□□ -0.53
SPG11-212ENST00000558790 C12orf42Q96LP6 360 aa11.77□□□□□ -0.53
SPG11-212ENST00000558790 VRTNQ9H8Y1 702 aa11.77□□□□□ -0.53
SPG11-212ENST00000558790 FLRT1Q9NZU1 646 aa11.77□□□□□ -0.53
SPG11-212ENST00000558790 DBNLQ9UJU6 430 aaKnown RBP11.77□□□□□ -0.53
SPG11-212ENST00000558790 FOSL2P15408 326 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 VCAM1P19320 739 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 CYP7A1P22680 504 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 USP4Q13107 963 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 TATDN1Q6P1N9 297 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 SSH3Q8TE77 659 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 ZNF512BQ96KM6 892 aaPredicted RBP11.76□□□□□ -0.53
SPG11-212ENST00000558790 OSBPL3Q9H4L5 887 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 CWC22Q9HCG8 908 aaKnown RBP11.76□□□□□ -0.53
SPG11-212ENST00000558790 RABGAP1Q9Y3P9 1069 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 MCM3APO60318 1980 aa11.76□□□□□ -0.53
SPG11-212ENST00000558790 LZTS3O60299 673 aaPredicted RBP11.75□□□□□ -0.53
SPG11-212ENST00000558790 IDH1O75874 414 aaKnown RBP11.75□□□□□ -0.53
SPG11-212ENST00000558790 RAB3GAP1Q15042 981 aa11.75□□□□□ -0.53
SPG11-212ENST00000558790 WDR78Q5VTH9 848 aa11.75□□□□□ -0.53
SPG11-212ENST00000558790 ACER1Q8TDN7 264 aa11.75□□□□□ -0.53
SPG11-212ENST00000558790 EHD4Q9H223 541 aa11.75□□□□□ -0.53
SPG11-212ENST00000558790 SERPINB13Q9UIV8 391 aa11.75□□□□□ -0.53
SPG11-212ENST00000558790 USP17L15C9J2P7 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L13C9JLJ4 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L11C9JVI0 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L18D6R9N7 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L22D6RA61 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L17D6RBQ6 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L19D6RCP7 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L20D6RJB6 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 NRG2O14511 850 aaPredicted RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 SURF6O75683 361 aaKnown RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 STAU1O95793 577 aaKnown RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 RASA1P20936 1047 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP5P45974 858 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 CLDN10P78369 228 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 CCNA1P78396 465 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 USP17L24Q0WX57 530 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 GRB14Q14449 540 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 CRTC2Q53ET0 693 aaPredicted RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 MAGEB6Q8N7X4 407 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 KIAA1683Q9H0B3 1180 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 CCDC8Q9H0W5 538 aaPredicted RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 BTBD7Q9P203 1132 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 DDX20Q9UHI6 824 aaKnown RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 KIAA1024Q9UPX6 916 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 GREB1LQ9C091 1923 aaPredicted RBP11.74□□□□□ -0.53
SPG11-212ENST00000558790 MYH4Q9Y623 1939 aa11.74□□□□□ -0.53
SPG11-212ENST00000558790 SLC15A5A6NIM6 579 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 IGSF3O75054 1194 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 GLRX3O76003 335 aaKnown RBP11.73□□□□□ -0.53
SPG11-212ENST00000558790 SHMT1P34896 483 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 USP14P54578 494 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 ATP8B2P98198 1209 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 ABCB5Q2M3G0 1257 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 CERKLQ49MI3 558 aaPredicted RBP11.73□□□□□ -0.53
SPG11-212ENST00000558790 MFSD14CQ5VZR4 134 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 LBX2Q6XYB7 198 aa11.73□□□□□ -0.53
SPG11-212ENST00000558790 CATSPERGQ6ZRH7 1159 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms