RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 NFICP08651 508 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 HCLS1P14317 486 aaPredicted RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 RAB6AP20340 208 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 MAP4P27816 1152 aaKnown RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 TMPOP42166 694 aaKnown RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 RIPK4P57078 832 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 ERVK-24P63145 666 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 HNRNPUQ00839 825 aaKnown RBP eCLIP5.59□□□□□ -1.51
SPG11-211ENST00000558561 RING1Q06587 406 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 TTLL4Q14679 1199 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 NFE2L2Q16236 605 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 RSPO4Q2I0M5 234 aaPredicted RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 NKAPLQ5M9Q1 402 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 WIPI1Q5MNZ9 446 aaPredicted RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 ZNF790Q6PG37 636 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 BEND4Q6ZU67 534 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 CYFIP1Q7L576 1253 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 HDXQ7Z353 690 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 CCDC84Q86UT8 332 aaPredicted RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 GATAD2BQ8WXI9 593 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 ELMO3Q96BJ8 720 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 ATXN3LQ9H3M9 355 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 SIPA1L3O60292 1781 aaPredicted RBP5.59□□□□□ -1.51
SPG11-211ENST00000558561 TJP1Q07157 1748 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 CEMIPQ8WUJ3 1361 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 MAP3K5Q99683 1374 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 MYBBP1AQ9BQG0 1328 aaKnown RBP5.58□□□□□ -1.52
SPG11-211ENST00000558561 HMX2A2RU54 273 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 PRAMEF27A3QJZ7 478 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 APAF1O14727 1248 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 TLR3O15455 904 aaKnown RBP5.58□□□□□ -1.52
SPG11-211ENST00000558561 DYNC1LI2O43237 492 aaPredicted RBP5.58□□□□□ -1.52
SPG11-211ENST00000558561 RNGTTO60942 597 aaKnown RBP5.58□□□□□ -1.52
SPG11-211ENST00000558561 CILPO75339 1184 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 ANXA1P04083 346 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 GYS1P13807 737 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 NTF4P34130 210 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 CRKP46108 304 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 TEFQ10587 303 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 TAF7Q15545 349 aaPredicted RBP5.58□□□□□ -1.52
SPG11-211ENST00000558561 PRR23CQ6ZRP0 262 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 CLEC10AQ8IUN9 316 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 NGEFQ8N5V2 710 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 RNF214Q8ND24 703 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 SPON2Q9BUD6 331 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 SEMA6CQ9H3T2 930 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 ACSS3Q9H6R3 686 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 C7orf69Q9H7B7 122 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 PIDD1Q9HB75 910 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 KCNQ5Q9NR82 932 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 PICK1Q9NRD5 415 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 IGSF5Q9NSI5 407 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 UBP1Q9NZI7 540 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 STOML1Q9UBI4 398 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 RAXQ9Y2V3 346 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 SNCAIPQ9Y6H5 919 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 ADAMTS7Q9UKP4 1686 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 KCPQ6ZWJ8 1503 aa5.58□□□□□ -1.52
SPG11-211ENST00000558561 COL24A1Q17RW2 1714 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 LRP5O75197 1615 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 A0A0G2JLW4 131 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 FAM95CA0A1B0GW59 222 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 H2AFB1P0C5Y9 115 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 H2AFB2P0C5Z0 115 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 YBX3P16989 372 aaKnown RBP eCLIP5.57□□□□□ -1.52
SPG11-211ENST00000558561 TM4SF1P30408 202 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 RPL6Q02878 288 aaKnown RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 DDR1Q08345 913 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 RAD51AP2Q09MP3 1159 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 NFKBIBQ15653 356 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 ZBTB37Q5TC79 503 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 UBE3DQ7Z6J8 389 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 NPM2Q86SE8 214 aaKnown RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 SMYD4Q8IYR2 804 aaPredicted RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 ZNF654Q8IZM8 581 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 PNISRQ8TF01 805 aaKnown RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 ISL2Q96A47 359 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 EAF1Q96JC9 268 aaPredicted RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 FAM83CQ9BQN1 747 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 DAGLAQ9Y4D2 1042 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 LAS1LQ9Y4W2 734 aaKnown RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 SUPT16HQ9Y5B9 1047 aaKnown RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 COL5A3P25940 1745 aaPredicted RBP5.57□□□□□ -1.52
SPG11-211ENST00000558561 QSER1Q2KHR3 1735 aa5.57□□□□□ -1.52
SPG11-211ENST00000558561 HEG1Q9ULI3 1381 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 FANCGO15287 622 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 DYRK3O43781 588 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 BPNT1O95861 308 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 MMP10P09238 476 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 KCNA3P22001 575 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 ERCC5P28715 1186 aaPredicted RBP5.56□□□□□ -1.52
SPG11-211ENST00000558561 RFC4P35249 363 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 EIF5P55010 431 aaKnown RBP5.56□□□□□ -1.52
SPG11-211ENST00000558561 EIF4A1P60842 406 aaKnown RBP5.56□□□□□ -1.52
SPG11-211ENST00000558561 HLFQ16534 295 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 PROSER3Q2NL68 480 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 TTLL7Q6ZT98 887 aa5.56□□□□□ -1.52
SPG11-211ENST00000558561 SLC51AQ86UW1 340 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms