RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 DDX11Q96FC9 970 aa16.64■□□□□ 0.25
USP3-205ENST00000557884 SPZ1Q9BXG8 430 aa16.64■□□□□ 0.25
USP3-205ENST00000557884 RBM28Q9NW13 759 aaKnown RBP16.64■□□□□ 0.25
USP3-205ENST00000557884 COL11A1P12107 1806 aaPredicted RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 hCG_1642624A0A1W2PR95 340 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 INHAP05111 366 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 ADD1P35611 737 aaKnown RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 NEK4P51957 841 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 CCT2P78371 535 aaKnown RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 TRIM32Q13049 653 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 CLEC4DQ8WXI8 215 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 TRIB2Q92519 343 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 RRP36Q96EU6 259 aaKnown RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 BACH2Q9BYV9 841 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 A1CFQ9NQ94 594 aaKnown RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 FAM217BQ9NTX9 383 aaPredicted RBP16.63■□□□□ 0.25
USP3-205ENST00000557884 FLRT1Q9NZU1 646 aa16.63■□□□□ 0.25
USP3-205ENST00000557884 HOXC6P09630 235 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 XRCC5P13010 732 aaKnown RBP16.62■□□□□ 0.25
USP3-205ENST00000557884 PDIA3P30101 505 aaKnown RBP16.62■□□□□ 0.25
USP3-205ENST00000557884 RCAN1P53805 252 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 AK2P54819 239 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 STK3Q13188 491 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 PXYLP1Q8TE99 480 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 ARMC5Q96C12 935 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 KIF2CQ99661 725 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 AMNQ9BXJ7 453 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 NCOA5Q9HCD5 579 aaKnown RBP16.62■□□□□ 0.25
USP3-205ENST00000557884 PNMA2Q9UL42 364 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 MGAMO43451 1857 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 ABCB11O95342 1321 aa16.62■□□□□ 0.25
USP3-205ENST00000557884 PNMA6FA0A0J9YX94 578 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 PTPDC1A2A3K4 754 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 CCDC85CA6NKD9 419 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 POTEB2H3BUK9 544 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 PPFIA3O75145 1194 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 HMGCRP04035 888 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 RBM25P49756 843 aaKnown RBP16.61■□□□□ 0.25
USP3-205ENST00000557884 CNTN2Q02246 1040 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 BAATQ14032 418 aaPredicted RBP16.61■□□□□ 0.25
USP3-205ENST00000557884 ZNF792Q3KQV3 632 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.61■□□□□ 0.257e-6■□□□□ 10.8
USP3-205ENST00000557884 ZNF333Q96JL9 665 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 SLC5A4Q9NY91 659 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 SEC63Q9UGP8 760 aaKnown RBP16.61■□□□□ 0.25
USP3-205ENST00000557884 PCDHA1Q9Y5I3 950 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 CNTNAP5Q8WYK1 1306 aa16.61■□□□□ 0.25
USP3-205ENST00000557884 DNAJC25-GNG10A0A024R161 153 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 SMARCA1P28370 1054 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 CYP2C19P33261 490 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 EVCP57679 992 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 FUT2Q10981 343 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 MTFR1Q15390 333 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 SLC30A10Q6XR72 485 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 TRMT44Q8IYL2 757 aaKnown RBP16.6■□□□□ 0.25
USP3-205ENST00000557884 MAML3Q96JK9 1138 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 PURBQ96QR8 312 aaKnown RBP16.6■□□□□ 0.25
USP3-205ENST00000557884 CYP39A1Q9NYL5 469 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 TPCN1Q9ULQ1 816 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 MRPL11Q9Y3B7 192 aaKnown RBP16.6■□□□□ 0.25
USP3-205ENST00000557884 PFASO15067 1338 aa16.6■□□□□ 0.25
USP3-205ENST00000557884 PLXNB2O15031 1838 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 CCDC196A0A1B0GTZ2 297 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 PRKAR2AP13861 404 aaKnown RBP16.59■□□□□ 0.25
USP3-205ENST00000557884 CALML3P27482 149 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 UBXN2AP68543 259 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 MFSD14CQ5VZR4 134 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 TBC1D5Q92609 795 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 ZNF274Q96GC6 653 aaPredicted RBP16.59■□□□□ 0.25
USP3-205ENST00000557884 TBC1D32Q96NH3 1257 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 ALDH8A1Q9H2A2 487 aaPredicted RBP16.59■□□□□ 0.25
USP3-205ENST00000557884 NID2Q14112 1375 aa16.59■□□□□ 0.25
USP3-205ENST00000557884 SOWAHBA6NEL2 793 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 CAPN15O75808 1086 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 CCL5P13501 91 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 RPS6P62753 249 aaKnown RBP16.58■□□□□ 0.24
USP3-205ENST00000557884 CACNB2Q08289 660 aaPredicted RBP16.58■□□□□ 0.24
USP3-205ENST00000557884 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
USP3-205ENST00000557884 ANKRD1Q15327 319 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 OLFML2BQ68BL8 750 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 RNF207Q6ZRF8 634 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 HEATR3Q7Z4Q2 680 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 FAM133AQ8N9E0 248 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 GPKOWQ92917 476 aaPredicted RBP eCLIP16.58■□□□□ 0.24
USP3-205ENST00000557884 PHKBQ93100 1093 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 FGD4Q96M96 766 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 UNC93B1Q9H1C4 597 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 DDX49Q9Y6V7 483 aaKnown RBP16.58■□□□□ 0.24
USP3-205ENST00000557884 V9GY48 417 aaPredicted RBP16.58■□□□□ 0.24
USP3-205ENST00000557884 DOCK3Q8IZD9 2030 aa16.58■□□□□ 0.24
USP3-205ENST00000557884 ZNF236Q9UL36 1845 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 OPLAHO14841 1288 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 CFBP00751 764 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 PPP2R5BQ15173 497 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 MCF2L2Q86YR7 1114 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 TINF2Q9BSI4 451 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 DIS3Q9Y2L1 958 aaKnown RBP16.57■□□□□ 0.24
USP3-205ENST00000557884 BRCA2P51587 3418 aa16.57■□□□□ 0.24
USP3-205ENST00000557884 ASTN1O14525 1302 aa16.56■□□□□ 0.24
USP3-205ENST00000557884 DTNBO60941 627 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms