RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 HIP1O00291 1037 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 RAG1P15918 1043 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 GJA9P57773 515 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 TNFAIP2Q03169 654 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 SHHQ15465 462 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 GNASQ5JWF2 1037 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 CCSAPQ6IQ19 270 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-235ENST00000557740 BTNL9Q6UXG8 535 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 ANKRD33Q7Z3H0 272 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 ESR2Q92731 530 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 KATNBL1Q9H079 304 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 TMEM39AQ9NV64 488 aa17.22■□□□□ 0.35
SHMT2-235ENST00000557740 ELP1O95163 1332 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 NEDD4P46934 1319 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 MROH7Q68CQ1 1323 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 KIAA0355O15063 1070 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 ASGR1P07306 291 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 C9orf50Q5SZB4 431 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 CWC27Q6UX04 472 aaKnown RBP17.21■□□□□ 0.35
SHMT2-235ENST00000557740 TTC14Q96N46 770 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 TOX2Q96NM4 488 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 MTMR10Q9NXD2 777 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 PNMA2Q9UL42 364 aa17.21■□□□□ 0.35
SHMT2-235ENST00000557740 A0A0U1RQG5 324 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-235ENST00000557740 ZNF213O14771 459 aa17.2■□□□□ 0.34
SHMT2-235ENST00000557740 PDHBP11177 359 aa17.2■□□□□ 0.34
SHMT2-235ENST00000557740 IRX5P78411 483 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-235ENST00000557740 FPGSQ05932 587 aa17.2■□□□□ 0.34
SHMT2-235ENST00000557740 TLK2Q86UE8 772 aa17.2■□□□□ 0.34
SHMT2-235ENST00000557740 SLC17A8Q8NDX2 589 aa17.2■□□□□ 0.34
SHMT2-235ENST00000557740 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 PTPDC1A2A3K4 754 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 ITGB8P26012 769 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 NT5C2P49902 561 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 ZNF543Q08ER8 600 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 FAAP100Q0VG06 881 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 CCDC178Q5BJE1 867 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 ZNF697Q5TEC3 545 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 FAM109BQ6ICB4 259 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 EEPD1Q7L9B9 569 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 FBXO16Q8IX29 292 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 RNPC3Q96LT9 517 aaKnown RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 AP5M1Q9H0R1 490 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 ADD3Q9UEY8 706 aaKnown RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 STXBP5LQ9Y2K9 1186 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 DDX49Q9Y6V7 483 aaKnown RBP17.19■□□□□ 0.34
SHMT2-235ENST00000557740 ASTN1O14525 1302 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 MCM3APO60318 1980 aa17.19■□□□□ 0.34
SHMT2-235ENST00000557740 NFIBO00712 420 aa17.18■□□□□ 0.34
SHMT2-235ENST00000557740 BEX3Q00994 111 aa17.18■□□□□ 0.34
SHMT2-235ENST00000557740 BAATQ14032 418 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-235ENST00000557740 GPATCH4Q5T3I0 446 aaKnown RBP17.18■□□□□ 0.34
SHMT2-235ENST00000557740 IQCA1Q86XH1 822 aa17.18■□□□□ 0.34
SHMT2-235ENST00000557740 ZKSCAN3Q9BRR0 538 aa17.18■□□□□ 0.34
SHMT2-235ENST00000557740 VTA1Q9NP79 307 aa17.18■□□□□ 0.34
SHMT2-235ENST00000557740 ARVCFO00192 962 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 TLR3O15455 904 aaKnown RBP17.17■□□□□ 0.34
SHMT2-235ENST00000557740 ZEB2O60315 1214 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 KDM4AO75164 1064 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 SNHG28P0DPA3 235 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 SMPD1P17405 629 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 NKX3-2P78367 333 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 FSCN1Q16658 493 aaKnown RBP17.17■□□□□ 0.34
SHMT2-235ENST00000557740 IMMTQ16891 758 aaKnown RBP17.17■□□□□ 0.34
SHMT2-235ENST00000557740 DGKHQ86XP1 1220 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 FAM161BQ96MY7 647 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 PURBQ96QR8 312 aaKnown RBP17.17■□□□□ 0.34
SHMT2-235ENST00000557740 DSCC1Q9BVC3 393 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 TBX21Q9UL17 535 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 GNEQ9Y223 722 aaKnown RBP17.17■□□□□ 0.34
SHMT2-235ENST00000557740 WDR19Q8NEZ3 1342 aa17.17■□□□□ 0.34
SHMT2-235ENST00000557740 CTAGE5O15320 804 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 CABYRO75952 493 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 CALML3P27482 149 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 CDK7P50613 346 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 ALDH5A1P51649 535 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-235ENST00000557740 SMAD3P84022 425 aaKnown RBP17.16■□□□□ 0.34
SHMT2-235ENST00000557740 IQSEC1Q6DN90 963 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 CXCL17Q6UXB2 119 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 SLC30A10Q6XR72 485 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 MORC4Q8TE76 937 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 MPHOSPH6Q99547 160 aaKnown RBP17.16■□□□□ 0.34
SHMT2-235ENST00000557740 KAT14Q9H8E8 782 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 PDGFCQ9NRA1 345 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 CTNNA3Q9UI47 895 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 LRRC37A2A6NM11 1700 aa17.16■□□□□ 0.34
SHMT2-235ENST00000557740 LOC102724159A0A0B4J2E5 919 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 B4E1Z4 1266 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 DYNC1LI2O43237 492 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-235ENST00000557740 TIMP1P01033 207 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 GOLGA8HP0CJ92 632 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 EPHB4P54760 987 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 PWP2Q15269 919 aaKnown RBP17.15■□□□□ 0.34
SHMT2-235ENST00000557740 TAPT1Q6NXT6 567 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 RNF207Q6ZRF8 634 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 KIAA1211Q6ZU35 1233 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 PNMA1Q8ND90 353 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 Q9Y3F1 56 aa17.15■□□□□ 0.34
SHMT2-235ENST00000557740 PDE4DQ08499 809 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 PPIGQ13427 754 aaKnown RBP eCLIP17.14■□□□□ 0.333e-10■□□□□ 10.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms