RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 FBXO16Q8IX29 292 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-227ENST00000557307 MSL3Q8N5Y2 521 aaKnown RBP12.88□□□□□ -0.35
SYNE2-227ENST00000557307 CHURC1Q8WUH1 139 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 TCP11L1Q9NUJ3 509 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 CYP39A1Q9NYL5 469 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 FBXO40Q9UH90 709 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 FAM184BQ9ULE4 1060 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 CCPG1Q9ULG6 757 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 B4E1Z4 1266 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 ICAM1P05362 532 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 C6orf222P0C671 652 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-227ENST00000557307 SNHG28P0DPA3 235 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 TOP1P11387 765 aaKnown RBP12.87□□□□□ -0.35
SYNE2-227ENST00000557307 AAMPQ13685 434 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 SHHQ15465 462 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 C1orf53Q5VUE5 145 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 BTNL9Q6UXG8 535 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 NSMFQ6X4W1 530 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 UPF3AQ9H1J1 476 aaKnown RBP12.87□□□□□ -0.35
SYNE2-227ENST00000557307 TAF6LQ9Y6J9 622 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 SCN5AQ14524 2016 aa12.87□□□□□ -0.35
SYNE2-227ENST00000557307 CHD9Q3L8U1 2897 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 DUSP11O75319 330 aaKnown RBP12.86□□□□□ -0.35
SYNE2-227ENST00000557307 ASGR1P07306 291 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 FDX1P10109 184 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 GJA9P57773 515 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 ZNF543Q08ER8 600 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 FAAP100Q0VG06 881 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 TAPT1Q6NXT6 567 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 MFSD6Q6ZSS7 791 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 DEFB123Q8N688 67 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 CLEC4DQ8WXI8 215 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 LBHD1Q9BQE6 289 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-227ENST00000557307 ABHD16BQ9H3Z7 469 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 DIAPH3Q9NSV4 1193 aa12.86□□□□□ -0.35
SYNE2-227ENST00000557307 KDM4AO75164 1064 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 CLTBP09497 229 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 SMPD1P17405 629 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 CST5P28325 142 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-227ENST00000557307 BAATQ14032 418 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-227ENST00000557307 TKFCQ3LXA3 575 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 TTC22Q5TAA0 569 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 PPP1R13LQ8WUF5 828 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 FAM161BQ96MY7 647 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 UBA5Q9GZZ9 404 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 STARD7Q9NQZ5 370 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 GNEQ9Y223 722 aaKnown RBP12.85□□□□□ -0.35
SYNE2-227ENST00000557307 TANC1Q9C0D5 1861 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 DOCK5Q9H7D0 1870 aa12.85□□□□□ -0.35
SYNE2-227ENST00000557307 ZNF213O14771 459 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 ALDH5A1P51649 535 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-227ENST00000557307 CYB5R4Q7L1T6 521 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 SKAP1Q86WV1 359 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 ENAHQ8N8S7 591 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-227ENST00000557307 TBC1D5Q92609 795 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 GUCD1Q96NT3 240 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 TSEN34Q9BSV6 310 aaKnown RBP12.84□□□□□ -0.35
SYNE2-227ENST00000557307 MTMR10Q9NXD2 777 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 PRKAG2Q9UGJ0 569 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 GRIN2DO15399 1336 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 MYH7BA7E2Y1 1941 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 PTPRSQ13332 1948 aa12.84□□□□□ -0.35
SYNE2-227ENST00000557307 PRUNE2Q8WUY3 3088 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 MOXD2PA6NHM9 499 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 KIAA0355O15063 1070 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 CDK7P50613 346 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 TNFAIP2Q03169 654 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 PTH1RQ03431 593 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 USH1GQ495M9 461 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 PPP4R3BQ5MIZ7 849 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 CXCL17Q6UXB2 119 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 ANKRD33Q7Z3H0 272 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 TLK2Q86UE8 772 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 TICAM2Q86XR7 235 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 PNMA1Q8ND90 353 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 MORC4Q8TE76 937 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 DSCC1Q9BVC3 393 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 ZSWIM5Q9P217 1185 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 TBX21Q9UL17 535 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 REV3LO60673 3130 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 SCN10AQ9Y5Y9 1956 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 TNKSO95271 1327 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 UMODL1Q5DID0 1318 aa12.83□□□□□ -0.36
SYNE2-227ENST00000557307 BAZ2BQ9UIF8 2168 aaKnown RBP12.82□□□□□ -0.36
SYNE2-227ENST00000557307 PTPDC1A2A3K4 754 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 CALML3P27482 149 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 PSMC6P62333 389 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 NKX3-2P78367 333 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 COL9A3Q14050 684 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-227ENST00000557307 SLC35G1Q2M3R5 365 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 GNASQ5JWF2 1037 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 FAM126BQ8IXS8 530 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 ESR2Q92731 530 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 SENP2Q9HC62 589 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 TMEM39AQ9NV64 488 aa12.82□□□□□ -0.36
SYNE2-227ENST00000557307 ASB14A6NK59 587 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 DYNC1LI2O43237 492 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 PCP11498 1178 aaKnown RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 MFAP1P55081 439 aaKnown RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 RPS6P62753 249 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms