RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 PPP1R15BQ5SWA1 713 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 IER5LQ5T953 404 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 NOL8Q76FK4 1167 aaKnown RBP11.2□□□□□ -0.62
SYNE2-224ENST00000557024 ARMCX2Q7L311 632 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 CPXCR1Q8N123 301 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 SLC43A3Q8NBI5 491 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 FRAT1Q92837 279 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-224ENST00000557024 HLA-CQ95604 372 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 VWCEQ96DN2 955 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 SCLYQ96I15 445 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 CCDC17Q96LX7 622 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 FGD4Q96M96 766 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 SLF1Q9BQI6 1058 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 ABHD16BQ9H3Z7 469 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 C1orf115Q9H7X2 142 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 ARMT1Q9H993 441 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 COG5Q9UP83 839 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 GRIN2DO15399 1336 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-224ENST00000557024 TULP1O00294 542 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-224ENST00000557024 IPO8O15397 1037 aaKnown RBP11.19□□□□□ -0.62
SYNE2-224ENST00000557024 B4GALT4O60513 344 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 PTGS1P23219 599 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 ATP8B2P98198 1209 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 ITGA7Q13683 1181 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 AACSQ86V21 672 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 RPUSD2Q8IZ73 545 aaKnown RBP11.19□□□□□ -0.62
SYNE2-224ENST00000557024 ARNTL2Q8WYA1 636 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 KANSL2Q9H9L4 492 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 NOP58Q9Y2X3 529 aaKnown RBP11.19□□□□□ -0.62
SYNE2-224ENST00000557024 NAV1Q8NEY1 1877 aa11.19□□□□□ -0.62
SYNE2-224ENST00000557024 ASTN1O14525 1302 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 TCRBV5S4A2TA0A5A2 114 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 CABYRO75952 493 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 ARHGEF15O94989 841 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 PSMC6P62333 389 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 NKX3-2P78367 333 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 TNFAIP2Q03169 654 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 TTF1Q15361 905 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-224ENST00000557024 FSCN1Q16658 493 aaKnown RBP11.18□□□□□ -0.62
SYNE2-224ENST00000557024 C12orf60Q5U649 245 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 CCDC144CPQ8IYA2 1237 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 ANKRD35Q8N283 1001 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 KATNBL1Q9H079 304 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 RAVER2Q9HCJ3 691 aaKnown RBP11.18□□□□□ -0.62
SYNE2-224ENST00000557024 CD320Q9NPF0 282 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 MYO9BQ13459 2157 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 MUC6Q6W4X9 2439 aa11.18□□□□□ -0.62
SYNE2-224ENST00000557024 USP17L12C9JPN9 530 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 USP17L21D6R901 530 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 GOLIM4O00461 696 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 MBD4O95243 580 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 TAP1Q03518 808 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 CAMK2BQ13554 666 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 SLFNL1Q499Z3 407 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 C16orf86Q6ZW13 317 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 DEFB128Q7Z7B8 93 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 TLK2Q86UE8 772 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 TMEM57Q8N5G2 664 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 AGBL1Q96MI9 1066 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 DNAJC2Q99543 621 aaKnown RBP11.17□□□□□ -0.62
SYNE2-224ENST00000557024 GPHNQ9NQX3 736 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-224ENST00000557024 HOMER2Q9NSB8 354 aa11.17□□□□□ -0.62
SYNE2-224ENST00000557024 CTDP1Q9Y5B0 961 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-224ENST00000557024 LRRC37A2A6NM11 1700 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 PI4K2BG5E9Z4 385 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 ATP2A1O14983 1001 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 DYNC1LI2O43237 492 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 ZBED4O75132 1171 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 CYP2C9P11712 490 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 MRE11P49959 708 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 CNTN2Q02246 1040 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 GRB10Q13322 594 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 SPRED2Q7Z698 418 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 AMOTL1Q8IY63 956 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 PRPF38AQ8NAV1 312 aaKnown RBP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 KIFC2Q96AC6 838 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 UIMC1Q96RL1 719 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 AP5M1Q9H0R1 490 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 ATP8A2Q9NTI2 1148 aa11.16□□□□□ -0.62
SYNE2-224ENST00000557024 GNEQ9Y223 722 aaKnown RBP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 SUPT16HQ9Y5B9 1047 aaKnown RBP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 DDX49Q9Y6V7 483 aaKnown RBP11.16□□□□□ -0.62
SYNE2-224ENST00000557024 PRRC2BQ5JSZ5 2229 aaKnown RBP11.15□□□□□ -0.62
SYNE2-224ENST00000557024 COL11A1P12107 1806 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-224ENST00000557024 PARP14Q460N5 1801 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 F5H6K3 240 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 ZEB2O60315 1214 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 NDUFB10O96000 172 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 PFKMP08237 780 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 SMPD1P17405 629 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 KLRC3Q07444 240 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 DSG2Q14126 1118 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 ALDH8A1Q9H2A2 487 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-224ENST00000557024 OCEL1Q9H607 264 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 IL1RAPL2Q9NP60 686 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 TRMT13Q9NUP7 481 aaKnown RBP11.15□□□□□ -0.62
SYNE2-224ENST00000557024 FBXO40Q9UH90 709 aa11.15□□□□□ -0.62
SYNE2-224ENST00000557024 EXOC6BQ9Y2D4 811 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms