RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 AGBL1Q96MI9 1066 aa15.07■□□□□ 0
SHMT2-223ENST00000556689 A1CFQ9NQ94 594 aaKnown RBP15.07■□□□□ 0
SHMT2-223ENST00000556689 ISY1Q9ULR0 285 aaKnown RBP15.07■□□□□ 0
SHMT2-223ENST00000556689 ASTN1O14525 1302 aa15.07■□□□□ 0
SHMT2-223ENST00000556689 TSPY3P0CV98 308 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 TSPY8P0CW00 308 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 CCL23P55773 120 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 PDE4BQ07343 736 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 IKQ13123 557 aaPredicted RBP15.06■□□□□ 0
SHMT2-223ENST00000556689 MIER1Q8N108 512 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 ADAMTS19Q8TE59 1207 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 TRERF1Q96PN7 1200 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 TRPV6Q9H1D0 765 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 TSPYL2Q9H2G4 693 aaPredicted RBP15.06■□□□□ 0
SHMT2-223ENST00000556689 EPB41L4AQ9HCS5 686 aaPredicted RBP15.06■□□□□ 0
SHMT2-223ENST00000556689 RNF146Q9NTX7 359 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 YBX2Q9Y2T7 364 aaKnown RBP15.06■□□□□ 0
SHMT2-223ENST00000556689 Q9Y3F1 56 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 GRIN2DO15399 1336 aa15.06■□□□□ 0
SHMT2-223ENST00000556689 SLC3A2P08195 630 aaKnown RBP15.05■□□□□ -0
SHMT2-223ENST00000556689 ALAS1P13196 640 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 SMPD1P17405 629 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 MCCP23508 829 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 SLC1A4P43007 532 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 TFAP4Q01664 338 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 IFNL3Q8IZI9 196 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 GPATCH3Q96I76 525 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 GMCL1Q96IK5 515 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 UHRF1Q96T88 793 aaPredicted RBP15.05■□□□□ -0
SHMT2-223ENST00000556689 NOC4LQ9BVI4 516 aaKnown RBP15.05■□□□□ -0
SHMT2-223ENST00000556689 NACAP1Q9BZK3 213 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 SLC4A7Q9Y6M7 1214 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 ZNF536O15090 1300 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 UMODL1Q5DID0 1318 aa15.05■□□□□ -0
SHMT2-223ENST00000556689 B4GALT4O60513 344 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 PLA2G6O60733 806 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 RABGGTBP53611 331 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 LRRFIP1Q32MZ4 808 aaKnown RBP15.04■□□□□ -0
SHMT2-223ENST00000556689 TAPT1Q6NXT6 567 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 CHMP4CQ96CF2 233 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 PDGFCQ9NRA1 345 aa15.04■□□□□ -0
SHMT2-223ENST00000556689 TTC28Q96AY4 2481 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 M0R2C6 588 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 PPP4R3BQ5MIZ7 849 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 RCSD1Q6JBY9 416 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 KIAA1211Q6ZU35 1233 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 EEPD1Q7L9B9 569 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 WNT8AQ9H1J5 351 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 CYP39A1Q9NYL5 469 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 PCDHA11Q9Y5I1 949 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 CHD9Q3L8U1 2897 aa15.03■□□□□ -0
SHMT2-223ENST00000556689 GREB1LQ9C091 1923 aaPredicted RBP15.02■□□□□ -0
SHMT2-223ENST00000556689 ZBBXA8MT70 800 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 SUPT20HL2P0C7V6 817 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 PTGS1P23219 599 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 SNAP25P60880 206 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 PSMC6P62333 389 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 PPP2R2DQ66LE6 453 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 KCTD1Q719H9 257 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 FBXO16Q8IX29 292 aaPredicted RBP15.02■□□□□ -0
SHMT2-223ENST00000556689 NAPBQ9H115 298 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 ALDH8A1Q9H2A2 487 aaPredicted RBP15.02■□□□□ -0
SHMT2-223ENST00000556689 VTA1Q9NP79 307 aa15.02■□□□□ -0
SHMT2-223ENST00000556689 DDX49Q9Y6V7 483 aaKnown RBP15.02■□□□□ -0
SHMT2-223ENST00000556689 PLIN4Q96Q06 1357 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 MYOGP15173 224 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 ATP2A2P16615 1042 aaKnown RBP15.01□□□□□ -0.01
SHMT2-223ENST00000556689 PPARAQ07869 468 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 AAK1Q2M2I8 961 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 MUM1L1Q5H9M0 696 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 TMEM63BQ5T3F8 832 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 TSHZ3Q63HK5 1081 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 MICALL1Q8N3F8 863 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 SCLYQ96I15 445 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 RAPGEFL1Q9UHV5 662 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 PRR12Q9ULL5 1215 aa15.01□□□□□ -0.01
SHMT2-223ENST00000556689 PFKMP08237 780 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 BMP1P13497 986 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 DUSP28Q4G0W2 176 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 TMEM67Q5HYA8 995 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 NSMFQ6X4W1 530 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 MORC4Q8TE76 937 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 VWCEQ96DN2 955 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 SEC62Q99442 399 aaKnown RBP15□□□□□ -0.01
SHMT2-223ENST00000556689 DCTPP1Q9H773 170 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 POLR3EQ9NVU0 708 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 CCPG1Q9ULG6 757 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 STX8Q9UNK0 236 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 XIRP2A4UGR9 3374 aa15□□□□□ -0.01
SHMT2-223ENST00000556689 CHD7Q9P2D1 2997 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 TSPY2A6NKD2 308 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 CYP2C9P11712 490 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 BAATQ14032 418 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-223ENST00000556689 TTLL4Q14679 1199 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 SKIV2LQ15477 1246 aaKnown RBP14.99□□□□□ -0.01
SHMT2-223ENST00000556689 PURBQ96QR8 312 aaKnown RBP14.99□□□□□ -0.01
SHMT2-223ENST00000556689 WDR11Q9BZH6 1224 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 GPHNQ9NQX3 736 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-223ENST00000556689 IL17RBQ9NRM6 502 aa14.99□□□□□ -0.01
SHMT2-223ENST00000556689 TRMT13Q9NUP7 481 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms