RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 JMJD8Q96S16 334 aa7.1□□□□□ -1.27
SCFD1-221ENST00000556534 PLCD4Q9BRC7 762 aa7.1□□□□□ -1.27
SCFD1-221ENST00000556534 ARHGEF4Q9NR80 690 aa7.1□□□□□ -1.27
SCFD1-221ENST00000556534 A0A1W2PQ45 241 aaPredicted RBP7.09□□□□□ -1.27
SCFD1-221ENST00000556534 A0A1W2PQY0 241 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 AGRPO00253 132 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 SCG5P05408 212 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 GLI1P08151 1106 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 GRIA2P42262 883 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 SEPHS1P49903 392 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 RTP1P59025 263 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 LRP10Q7Z4F1 713 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 CYP26B1Q9NR63 512 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 GPR160Q9UJ42 338 aa7.09□□□□□ -1.27
SCFD1-221ENST00000556534 IQCA1LA6NCM1 817 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 ZNF503-AS2A6NEH8 195 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 THBDP07204 575 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 GFRA1P56159 465 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 SF1Q15637 639 aaKnown RBP7.08□□□□□ -1.28
SCFD1-221ENST00000556534 SLC14A2Q15849 920 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 MTERF2Q49AM1 385 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 NPLOC4Q8TAT6 608 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 C1orf159Q96HA4 380 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 LNPKQ9C0E8 428 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 TAF6LQ9Y6J9 622 aa7.08□□□□□ -1.28
SCFD1-221ENST00000556534 KRTAP9-6A0A140TA67 174 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 WTIPA6NIX2 430 aaPredicted RBP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 ADCY3O60266 1144 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 DIAPH1O60610 1272 aaKnown RBP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 GALK1P51570 392 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 KIR3DS1Q14943 382 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 TMEM67Q5HYA8 995 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 HLA-DQA1Q5Y7H0 255 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 GALNT18Q6P9A2 607 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 FRS2Q8WU20 508 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 ASIC4Q96FT7 647 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 SRPK1Q96SB4 655 aaKnown RBP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 CWC22Q9HCG8 908 aaKnown RBP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 GPRC5CQ9NQ84 441 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 CLEC1BQ9P126 229 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 IMPACTQ9P2X3 320 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 PFDN2Q9UHV9 154 aa7.07□□□□□ -1.28
SCFD1-221ENST00000556534 YBX2Q9Y2T7 364 aaKnown RBP7.07□□□□□ -1.28
SCFD1-221ENST00000556534 TBC1D8O95759 1140 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 SNRPB2P08579 225 aaKnown RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 PLS3P13797 630 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 HOXC12P31275 282 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 RANGAP1P46060 587 aaPredicted RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 SSRP1Q08945 709 aaKnown RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 LAPTM5Q13571 262 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 SNX17Q15036 470 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 PRSS53Q2L4Q9 553 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 MBLAC2Q68D91 279 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 LRRC47Q8N1G4 583 aaKnown RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 TMEM145Q8NBT3 493 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 KREMEN2Q8NCW0 462 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 LIN37Q96GY3 246 aaPredicted RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 AARSD1Q9BTE6 412 aaKnown RBP7.06□□□□□ -1.28
SCFD1-221ENST00000556534 SPATA9Q9BWV2 254 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 ACSL6Q9UKU0 697 aa7.06□□□□□ -1.28
SCFD1-221ENST00000556534 NPHP3-ACAD11A0A0J9YXS1 232 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 MSL3P1P0C860 447 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 PAMP19021 973 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 HSP90AA2PQ14568 343 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-221ENST00000556534 BMS1Q14692 1282 aaKnown RBP7.05□□□□□ -1.28
SCFD1-221ENST00000556534 TESK1Q15569 626 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 SLC35F1Q5T1Q4 408 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 DENND5AQ6IQ26 1287 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 INTS4Q96HW7 963 aaKnown RBP7.05□□□□□ -1.28
SCFD1-221ENST00000556534 IER2Q9BTL4 223 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 CRTAC1Q9NQ79 661 aa7.05□□□□□ -1.28
SCFD1-221ENST00000556534 TRBV23OR9-2A0A075B6M9 112 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 ARNTLO00327 626 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 FGFR1P11362 822 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 L1CAMP32004 1257 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 ECI1P42126 302 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 CORO7P57737 925 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 MVKQ03426 396 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 MAP4K2Q12851 820 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 IFRD2Q12894 506 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-221ENST00000556534 ACBD5Q5T8D3 534 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-221ENST00000556534 YOD1Q5VVQ6 348 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-221ENST00000556534 CPNE8Q86YQ8 564 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 JAMLQ86YT9 394 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 CCDC103Q8IW40 242 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 NUP43Q8NFH3 380 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 OSBP2Q969R2 916 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 CCDC140Q96MF4 163 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 MMP19Q99542 508 aa7.04□□□□□ -1.28
SCFD1-221ENST00000556534 TMEFF2Q9UIK5 374 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-221ENST00000556534 CDK11AQ9UQ88 783 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-221ENST00000556534 TRAV20A0A0B4J274 112 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 DLX3O60479 287 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 CPP00450 1065 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 PNLIPP16233 465 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 PRKCAP17252 672 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 KCNJ6P48051 423 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 CCDC144BQ3MJ40 725 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 E4F1Q66K89 784 aaPredicted RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms