RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 TMEM67Q5HYA8 995 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 GPATCH4Q5T3I0 446 aaKnown RBP11.29□□□□□ -0.6
SRP54-210ENST00000556380 DHX32Q7L7V1 743 aaKnown RBP11.29□□□□□ -0.6
SRP54-210ENST00000556380 CCAR1Q8IX12 1150 aaKnown RBP11.29□□□□□ -0.6
SRP54-210ENST00000556380 ABRAQ8N0Z2 381 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 SH3TC2Q8TF17 1288 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 SOCS4Q8WXH5 440 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 ZNF333Q96JL9 665 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 TMEM87BQ96K49 555 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 NUDT12Q9BQG2 462 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 RAVER2Q9HCJ3 691 aaKnown RBP11.29□□□□□ -0.6
SRP54-210ENST00000556380 MGAMO43451 1857 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 WDR19Q8NEZ3 1342 aa11.29□□□□□ -0.6
SRP54-210ENST00000556380 COBLO75128 1261 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 ELNP15502 786 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 ZKSCAN1P17029 563 aaPredicted RBP11.28□□□□□ -0.6
SRP54-210ENST00000556380 CYP2B6P20813 491 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 COPB2P35606 906 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 LIFRP42702 1097 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 SNAP25P60880 206 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 MAP2K5Q13163 448 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 GRM4Q14833 912 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 WTAPQ15007 396 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 SART3Q15020 963 aaKnown RBP11.28□□□□□ -0.6
SRP54-210ENST00000556380 SLC9C1Q4G0N8 1177 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 ASPRV1Q53RT3 343 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 SNRNP48Q6IEG0 339 aaKnown RBP11.28□□□□□ -0.6
SRP54-210ENST00000556380 SGMS1Q86VZ5 419 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 NCAPG2Q86XI2 1143 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 CPXCR1Q8N123 301 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 STAG2Q8N3U4 1231 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 AGBL1Q96MI9 1066 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 UBA5Q9GZZ9 404 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 CPVLQ9H3G5 476 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 RTN4Q9NQC3 1192 aaKnown RBP11.28□□□□□ -0.6
SRP54-210ENST00000556380 MAD2L2Q9UI95 211 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 PLXNB2O15031 1838 aa11.28□□□□□ -0.6
SRP54-210ENST00000556380 ERICH2A1L162 156 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 PARP1P09874 1014 aaKnown RBP11.27□□□□□ -0.61
SRP54-210ENST00000556380 ADORA2AP29274 412 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 RGS2P41220 211 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 IKQ13123 557 aaPredicted RBP11.27□□□□□ -0.61
SRP54-210ENST00000556380 IFFO2Q5TF58 517 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 WDR78Q5VTH9 848 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 NBPF11Q86T75 865 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 TMTC2Q8N394 836 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 NPLOC4Q8TAT6 608 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 TRIB2Q92519 343 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 MTMR8Q96EF0 704 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 MAP3K14Q99558 947 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 LRRC2Q9BYS8 371 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 JMJD4Q9H9V9 463 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 ISY1Q9ULR0 285 aaKnown RBP11.27□□□□□ -0.61
SRP54-210ENST00000556380 VPS9D1Q9Y2B5 631 aa11.27□□□□□ -0.61
SRP54-210ENST00000556380 DNAJC25-GNG10A0A024R161 153 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CCDC85CA6NKD9 419 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 KLRF2D3W0D1 207 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 ICAM1P05362 532 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 HMGB1P09429 215 aaKnown RBP11.26□□□□□ -0.61
SRP54-210ENST00000556380 FCER1AP12319 257 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CPA1P15085 419 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 TRIM32Q13049 653 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 MTFR1Q15390 333 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CCL14Q16627 93 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 TKFCQ3LXA3 575 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 C8orf34Q49A92 452 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 MAP3K21Q5TCX8 1036 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CCDC174Q6PII3 467 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CATIPQ7Z7H3 387 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 ADGRF4Q8IZF3 695 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 ZNF654Q8IZM8 581 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 FBXL16Q8N461 479 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CHST13Q8NET6 341 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 ZDHHC16Q969W1 377 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 IL17RAQ96F46 866 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 TCEANC2Q96MN5 208 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 JAKMIP1Q96N16 626 aaKnown RBP11.26□□□□□ -0.61
SRP54-210ENST00000556380 APBA2Q99767 749 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 RIOX1Q9H6W3 641 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 FLRT1Q9NZU1 646 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 IVNS1ABPQ9Y6Y0 642 aa11.26□□□□□ -0.61
SRP54-210ENST00000556380 CYTH3O43739 400 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 DDAH1O94760 285 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 INHAP05111 366 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 TAL1P17542 331 aaPredicted RBP11.25□□□□□ -0.61
SRP54-210ENST00000556380 ZNF792Q3KQV3 632 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 TRMT44Q8IYL2 757 aaKnown RBP11.25□□□□□ -0.61
SRP54-210ENST00000556380 CLEC4DQ8WXI8 215 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 TRERF1Q96PN7 1200 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 MMP19Q99542 508 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 AGXT2Q9BYV1 514 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 ADAM33Q9BZ11 813 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 TM6SF1Q9BZW5 370 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 CWC22Q9HCG8 908 aaKnown RBP11.25□□□□□ -0.61
SRP54-210ENST00000556380 HCSTQ9UBK5 93 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 FBXO40Q9UH90 709 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 BRPF3Q9ULD4 1205 aa11.25□□□□□ -0.61
SRP54-210ENST00000556380 DIS3Q9Y2L1 958 aaKnown RBP11.25□□□□□ -0.61
SRP54-210ENST00000556380 CTDP1Q9Y5B0 961 aaPredicted RBP11.25□□□□□ -0.61
SRP54-210ENST00000556380 COL11A1P12107 1806 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms