RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PDLIM7Q9NR12 457 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 PRR13Q9NZ81 148 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 MATN3O15232 486 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 SUV39H1O43463 412 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 SORBS3O60504 671 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 NCAM1P13591 858 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 NME1P15531 152 aaKnown RBP6.46□□□□□ -1.38
SCFD1-218ENST00000556256 EIF4A3P38919 411 aaKnown RBP6.46□□□□□ -1.38
SCFD1-218ENST00000556256 MC3RP41968 323 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 CLCQ05315 142 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 CARFQ8N187 725 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 DSCC1Q9BVC3 393 aa6.46□□□□□ -1.38
SCFD1-218ENST00000556256 SUPT16HQ9Y5B9 1047 aaKnown RBP6.46□□□□□ -1.38
SCFD1-218ENST00000556256 ASGR2P07307 311 aa6.45□□□□□ -1.38
SCFD1-218ENST00000556256 GK5Q6ZS86 529 aa6.45□□□□□ -1.38
SCFD1-218ENST00000556256 ERMP1Q7Z2K6 904 aa6.45□□□□□ -1.38
SCFD1-218ENST00000556256 TNFRSF10CO14798 259 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 B3GNT8Q7Z7M8 397 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 C7orf61Q8IZ16 206 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 REXO1Q8N1G1 1221 aaKnown RBP6.44□□□□□ -1.38
SCFD1-218ENST00000556256 SLC16A11Q8NCK7 471 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 ZNF296Q8WUU4 475 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-218ENST00000556256 SLC9A7Q96T83 725 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 KRTAP3-1Q9BYR8 98 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 VTI1BQ9UEU0 232 aa6.44□□□□□ -1.38
SCFD1-218ENST00000556256 DBR1Q9UK59 544 aaKnown RBP6.44□□□□□ -1.38
SCFD1-218ENST00000556256 SHOXO15266 292 aa6.43□□□□□ -1.38
SCFD1-218ENST00000556256 FGF10O15520 208 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-218ENST00000556256 FSHBP01225 129 aa6.43□□□□□ -1.38
SCFD1-218ENST00000556256 TACR1P25103 407 aa6.43□□□□□ -1.38
SCFD1-218ENST00000556256 GJA9P57773 515 aa6.43□□□□□ -1.38
SCFD1-218ENST00000556256 SEZ6Q53EL9 994 aa6.43□□□□□ -1.38
SCFD1-218ENST00000556256 CWF19L1Q69YN2 538 aaKnown RBP6.43□□□□□ -1.38
SCFD1-218ENST00000556256 SRRTQ9BXP5 876 aaKnown RBP6.43□□□□□ -1.38
SCFD1-218ENST00000556256 C9IYK1 514 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 C1QTNF3-AMACRE9PGA6 284 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 H0Y8X5 98 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 LRRFIP1Q32MZ4 808 aaKnown RBP6.42□□□□□ -1.38
SCFD1-218ENST00000556256 CPZQ66K79 652 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 FBXO33Q7Z6M2 555 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 NLGN2Q8NFZ4 835 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 BCAS3Q9H6U6 928 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 SPATA6Q9NWH7 488 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-218ENST00000556256 UBP1Q9NZI7 540 aa6.42□□□□□ -1.38
SCFD1-218ENST00000556256 SUCOQ9UBS9 1254 aaKnown RBP6.42□□□□□ -1.38
SCFD1-218ENST00000556256 MEIS3P2A8K0S8 358 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 MCM4P33991 863 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 SARSP49591 514 aaKnown RBP6.41□□□□□ -1.38
SCFD1-218ENST00000556256 CORO7P57737 925 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 CYP2R1Q6VVX0 501 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 USP48Q86UV5 1035 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 ZNF761Q86XN6 746 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-218ENST00000556256 ALG3Q92685 438 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 DHRS1Q96LJ7 313 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 C8orf49Q96NF6 230 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 NOX5Q96PH1 765 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 C1QTNF3Q9BXJ4 246 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 MRS2Q9HD23 443 aa6.41□□□□□ -1.38
SCFD1-218ENST00000556256 ZNF20P17024 532 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 PMLP29590 882 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 NOP2P46087 812 aaKnown RBP6.4□□□□□ -1.38
SCFD1-218ENST00000556256 TAGLNQ01995 201 aaKnown RBP6.4□□□□□ -1.38
SCFD1-218ENST00000556256 CCDC144CPQ8IYA2 1237 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 PTCHD1Q96NR3 888 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 SAMD11Q96NU1 681 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 FCRL3Q96P31 734 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-218ENST00000556256 SORCS2Q96PQ0 1159 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 RXFP1Q9HBX9 757 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 NTMQ9P121 344 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 SRRDQ9UH36 339 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 ADAMTS1Q9UHI8 967 aa6.4□□□□□ -1.38
SCFD1-218ENST00000556256 FAM86C2PA6NEL3 165 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 GLI4P10075 376 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 ACRP10323 421 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 ZNF165P49910 485 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 ZNF445P59923 1031 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 INTS3Q68E01 1043 aaKnown RBP6.39□□□□□ -1.39
SCFD1-218ENST00000556256 BRF1Q92994 677 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 LOXL4Q96JB6 756 aa6.39□□□□□ -1.39
SCFD1-218ENST00000556256 TBC1D8O95759 1140 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 L1CAMP32004 1257 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 APOBRQ0VD83 1088 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 TBC1D10BQ4KMP7 808 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-218ENST00000556256 ANKRD39Q53RE8 183 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 NOL9Q5SY16 702 aaKnown RBP6.38□□□□□ -1.39
SCFD1-218ENST00000556256 DNAJC14Q6Y2X3 702 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-218ENST00000556256 SMARCC2Q8TAQ2 1214 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 TSPAN17Q96FV3 270 aa6.38□□□□□ -1.39
SCFD1-218ENST00000556256 PMS1P54277 932 aaKnown RBP6.37□□□□□ -1.39
SCFD1-218ENST00000556256 TDRD10Q5VZ19 366 aaKnown RBP6.37□□□□□ -1.39
SCFD1-218ENST00000556256 DCAF15Q66K64 600 aa6.37□□□□□ -1.39
SCFD1-218ENST00000556256 SND1Q7KZF4 910 aaKnown RBP eCLIP6.37□□□□□ -1.39
SCFD1-218ENST00000556256 TTC9BQ8N6N2 239 aa6.37□□□□□ -1.39
SCFD1-218ENST00000556256 CPA5Q8WXQ8 436 aa6.37□□□□□ -1.39
SCFD1-218ENST00000556256 GP6Q9HCN6 339 aa6.37□□□□□ -1.39
SCFD1-218ENST00000556256 PATL2C9JE40 543 aaKnown RBP6.36□□□□□ -1.39
SCFD1-218ENST00000556256 PLATP00750 562 aa6.36□□□□□ -1.39
SCFD1-218ENST00000556256 IFNGR1P15260 489 aa6.36□□□□□ -1.39
SCFD1-218ENST00000556256 CACNB2Q08289 660 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-218ENST00000556256 AXDND1Q5T1B0 1012 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms