RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LONP1P36776 959 aaKnown RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L24Q0WX57 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 SF3A3Q12874 501 aaKnown RBP eCLIP16.54■□□□□ 0.24
CUX1-215ENST00000556210 ODF2Q5BJF6 829 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L6PQ6QN14 398 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 TC2NQ8N9U0 490 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 RGPD2P0DJD1 1756 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 TBCAO75347 108 aaKnown RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 TACC1O75410 805 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 GPSM2P81274 684 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 RAD9BQ6WBX8 426 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 ZNF512BQ96KM6 892 aaPredicted RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 PSTPIP2Q9H939 334 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 IBSPP21815 317 aaPredicted RBP16.53■□□□□ 0.24
CUX1-215ENST00000556210 CNNM4Q6P4Q7 775 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 ALS2CR12Q96Q35 445 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 KIAA1024Q9UPX6 916 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 MAGEA1P43355 309 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 GRAPQ13588 217 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 PKN1Q16512 942 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 LONRF2Q1L5Z9 754 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 ZNF658Q5TYW1 1059 aaPredicted RBP16.53■□□□□ 0.24
CUX1-215ENST00000556210 TTBK2Q6IQ55 1244 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 CCDC174Q6PII3 467 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 POTEDQ86YR6 584 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 CPXCR1Q8N123 301 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 GRAPLQ8TC17 118 aaPredicted RBP16.53■□□□□ 0.24
CUX1-215ENST00000556210 BPIFA3Q9BQP9 254 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 PDE11AQ9HCR9 933 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 HOMER2Q9NSB8 354 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 SCAF8Q9UPN6 1271 aaKnown RBP16.53■□□□□ 0.24
CUX1-215ENST00000556210 H7C1D1 291 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 TDP2O95551 362 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 IVLP07476 585 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 TCP11X2Q5H9J9 407 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 PCDHA1Q9Y5I3 950 aa16.53■□□□□ 0.24
CUX1-215ENST00000556210 TTC26A0AVF1 554 aa16.52■□□□□ 0.24
CUX1-215ENST00000556210 MFAP3LO75121 409 aa16.52■□□□□ 0.24
CUX1-215ENST00000556210 PCDHB13Q9Y5F0 798 aa16.52■□□□□ 0.24
CUX1-215ENST00000556210 RIC1Q4ADV7 1423 aa16.52■□□□□ 0.24
CUX1-215ENST00000556210 SETQ01105 290 aaPredicted RBP16.52■□□□□ 0.24
CUX1-215ENST00000556210 KRT26Q7Z3Y9 468 aa16.52■□□□□ 0.24
CUX1-215ENST00000556210 IFIH1Q9BYX4 1025 aaKnown RBP16.52■□□□□ 0.24
CUX1-215ENST00000556210 PABPC4Q13310 644 aaKnown RBP eCLIP16.52■□□□□ 0.23
CUX1-215ENST00000556210 SEC23AQ15436 765 aa16.52■□□□□ 0.23
CUX1-215ENST00000556210 MAP9Q49MG5 647 aa16.52■□□□□ 0.23
CUX1-215ENST00000556210 C12orf60Q5U649 245 aa16.52■□□□□ 0.23
CUX1-215ENST00000556210 CLRN2A0PK11 232 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 RABGGTAQ92696 567 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 SETD1AO15047 1707 aaKnown RBP16.51■□□□□ 0.23
CUX1-215ENST00000556210 KLK7P49862 253 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 ATP2C1P98194 919 aaPredicted RBP16.51■□□□□ 0.23
CUX1-215ENST00000556210 SF3B3Q15393 1217 aaKnown RBP16.51■□□□□ 0.23
CUX1-215ENST00000556210 MYO6Q9UM54 1294 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 FAM205AQ6ZU69 1335 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 HOXA13P31271 388 aaPredicted RBP16.51■□□□□ 0.23
CUX1-215ENST00000556210 DGKHQ86XP1 1220 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 LEMD3Q9Y2U8 911 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 ADGRG1Q9Y653 693 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 PARP3Q9Y6F1 533 aa16.51■□□□□ 0.23
CUX1-215ENST00000556210 SFI1A8K8P3 1242 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 CC2D1AQ6P1N0 951 aaPredicted RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 DDX25Q9UHL0 483 aaKnown RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 SERPINB13Q9UIV8 391 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 TCP10L2B9ZVM9 353 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 SORBS3O60504 671 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 TADA3O75528 432 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 CYP2C19P33261 490 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 LLGL1Q15334 1064 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 FBXO33Q7Z6M2 555 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 GPBP1Q86WP2 473 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 ZNF579Q8NAF0 562 aaKnown RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 GOPCQ9HD26 462 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 SAR1BQ9Y6B6 198 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 SSR1P43307 286 aaKnown RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 GSPT2Q8IYD1 628 aaKnown RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 L2HGDHQ9H9P8 463 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 SUGCTQ9HAC7 445 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 CNTNAP5Q8WYK1 1306 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 BCL9O00512 1426 aa16.5■□□□□ 0.23
CUX1-215ENST00000556210 FAM208AQ9UK61 1670 aaKnown RBP16.5■□□□□ 0.23
CUX1-215ENST00000556210 IQCEQ6IPM2 695 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 SEPT12Q8IYM1 358 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 SECISBP2LQ93073 1101 aaKnown RBP16.49■□□□□ 0.23
CUX1-215ENST00000556210 CDC23Q9UJX2 597 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.49■□□□□ 0.23
CUX1-215ENST00000556210 FMN2Q9NZ56 1722 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 TMEM110-MUSTN1A8MSY1 372 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 SEMA3EO15041 775 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 AKR1B1P15121 316 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 POLR2FP61218 127 aaKnown RBP16.49■□□□□ 0.23
CUX1-215ENST00000556210 STK4Q13043 487 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 TPH2Q8IWU9 490 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 P2RX5Q93086 422 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 NDUFA10O95299 355 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 PLA2G4AP47712 749 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 DNM2P50570 870 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 MAATS1Q7Z4T9 603 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 LARP4BQ92615 738 aaKnown RBP16.49■□□□□ 0.23
CUX1-215ENST00000556210 TEKT1Q969V4 418 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms