RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 VAV3Q9UKW4 847 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 ANKRD62A6NC57 917 aa8.3□□□□□ -1.08
LINC00643-204ENST00000555934 GYS2P54840 703 aa8.3□□□□□ -1.08
LINC00643-204ENST00000555934 DENND5AQ6IQ26 1287 aa8.3□□□□□ -1.08
LINC00643-204ENST00000555934 RNF111Q6ZNA4 994 aa8.3□□□□□ -1.08
LINC00643-204ENST00000555934 FEZ1Q99689 392 aa8.3□□□□□ -1.08
LINC00643-204ENST00000555934 SLKQ9H2G2 1235 aaPredicted RBP8.3□□□□□ -1.08
LINC00643-204ENST00000555934 TMEM82A0PJX8 343 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 PRNPP04156 253 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 CD8BP10966 210 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 PLS3P13797 630 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 CANXP27824 592 aaKnown RBP8.29□□□□□ -1.08
LINC00643-204ENST00000555934 TEKQ02763 1124 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 NTRK3Q16288 839 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 SPRED2Q7Z698 418 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 KIAA0907Q7Z7F0 614 aaPredicted RBP8.29□□□□□ -1.08
LINC00643-204ENST00000555934 KSR1Q8IVT5 923 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 PPIL6Q8IXY8 311 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 NAT16Q8N8M0 369 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 FRS2Q8WU20 508 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 BCL7CQ8WUZ0 217 aaPredicted RBP8.29□□□□□ -1.08
LINC00643-204ENST00000555934 COPS5Q92905 334 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 C1orf159Q96HA4 380 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 CCDC140Q96MF4 163 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 NCOA5Q9HCD5 579 aaKnown RBP8.29□□□□□ -1.08
LINC00643-204ENST00000555934 NDOR1Q9UHB4 597 aa8.29□□□□□ -1.08
LINC00643-204ENST00000555934 TMEFF2Q9UIK5 374 aaPredicted RBP8.29□□□□□ -1.08
LINC00643-204ENST00000555934 HYAL3O43820 417 aaPredicted RBP8.28□□□□□ -1.08
LINC00643-204ENST00000555934 CPP00450 1065 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 MAP4K2Q12851 820 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 SLC35F1Q5T1Q4 408 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 KCNT2Q6UVM3 1135 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 DHX37Q8IY37 1157 aaKnown RBP8.28□□□□□ -1.08
LINC00643-204ENST00000555934 KREMEN2Q8NCW0 462 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 CLUHP3Q96NS8 147 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 PRDM7Q9NQW5 492 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 SLC5A6Q9Y289 635 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 TRAF6Q9Y4K3 522 aa8.28□□□□□ -1.08
LINC00643-204ENST00000555934 CCDC163A0A0D9SF12 145 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 SCG5P05408 212 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 C6orf222P0C671 652 aaPredicted RBP8.27□□□□□ -1.09
LINC00643-204ENST00000555934 ZP2Q05996 745 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 PABPC4Q13310 644 aaKnown RBP eCLIP8.27□□□□□ -1.09
LINC00643-204ENST00000555934 VSIG10LQ86VR7 867 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 CPNE8Q86YQ8 564 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 NPLOC4Q8TAT6 608 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 MISP3Q96FF7 219 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 SLAMF8Q9P0V8 285 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 CCDC39Q9UFE4 941 aa8.27□□□□□ -1.09
LINC00643-204ENST00000555934 ARNTLO00327 626 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 IRS4O14654 1257 aaPredicted RBP8.26□□□□□ -1.09
LINC00643-204ENST00000555934 FGF10O15520 208 aaPredicted RBP8.26□□□□□ -1.09
LINC00643-204ENST00000555934 MEFVO15553 781 aaPredicted RBP8.26□□□□□ -1.09
LINC00643-204ENST00000555934 LAPTM5Q13571 262 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 ANGEL2Q5VTE6 544 aaKnown RBP8.26□□□□□ -1.09
LINC00643-204ENST00000555934 EEF1DP3Q658K8 133 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 RCSD1Q6JBY9 416 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 STK11IPQ8N1F8 1099 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 FLCNQ8NFG4 579 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 PTCHD1Q96NR3 888 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 SLC52A2Q9HAB3 445 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 SFMBT1Q9UHJ3 866 aa8.26□□□□□ -1.09
LINC00643-204ENST00000555934 NPHP3-ACAD11A0A0J9YXS1 232 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 PLD2O14939 933 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 LCP1P13796 627 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 PAMP19021 973 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 DALRD3Q5D0E6 543 aaKnown RBP8.25□□□□□ -1.09
LINC00643-204ENST00000555934 RALGPS1Q5JS13 557 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 WFDC3Q8IUB2 231 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 CCDC103Q8IW40 242 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 SLC7A14Q8TBB6 771 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 ERVK13-1Q9NX77 482 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 ANGEL1Q9UNK9 670 aaKnown RBP8.25□□□□□ -1.09
LINC00643-204ENST00000555934 ASXL2Q76L83 1435 aa8.25□□□□□ -1.09
LINC00643-204ENST00000555934 DNAJC25-GNG10A0A024R161 153 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 ADAMTS4O75173 837 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 NFXL1Q6ZNB6 911 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 SYNPOQ8N3V7 929 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 SYTL4Q96C24 671 aaPredicted RBP8.24□□□□□ -1.09
LINC00643-204ENST00000555934 PHF20Q9BVI0 1012 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 MRPL4Q9BYD3 311 aaKnown RBP8.24□□□□□ -1.09
LINC00643-204ENST00000555934 ADAMTS10Q9H324 1103 aa8.24□□□□□ -1.09
LINC00643-204ENST00000555934 WNT11O96014 354 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 SDSP20132 328 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 GABREP78334 506 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 INF2Q27J81 1249 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 MBLAC2Q68D91 279 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 BRAPQ7Z569 592 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 FILIP1Q7Z7B0 1213 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 NIM1KQ8IY84 436 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 TMEM52Q8NDY8 209 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 DIO2Q92813 273 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 PTPRN2Q92932 1015 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 EBF1Q9UH73 591 aa8.23□□□□□ -1.09
LINC00643-204ENST00000555934 MSCO60682 206 aa8.22□□□□□ -1.09
LINC00643-204ENST00000555934 USP2O75604 605 aaPredicted RBP8.22□□□□□ -1.09
LINC00643-204ENST00000555934 HK2P52789 917 aa8.22□□□□□ -1.09
LINC00643-204ENST00000555934 FNDC3BQ53EP0 1204 aaKnown RBP8.22□□□□□ -1.09
LINC00643-204ENST00000555934 RNF187Q5TA31 235 aaPredicted RBP8.22□□□□□ -1.09
LINC00643-204ENST00000555934 FGD2Q7Z6J4 655 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 264.6 ms