RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 REXO1Q8N1G1 1221 aaKnown RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 SMC1BQ8NDV3 1235 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 LEO1Q8WVC0 666 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 CUL5Q93034 780 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 MS4A4AQ96JQ5 239 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 SPATA32Q96LK8 384 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 P2RX7Q99572 595 aaKnown RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 HOXC10Q9NYD6 342 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 CFAP45Q9UL16 551 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 AGTPBP1Q9UPW5 1226 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 CTDP1Q9Y5B0 961 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 PCDHB6Q9Y5E3 794 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 TCHHQ07283 1943 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 CCDC194A0A1B0GVG4 234 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 DDX11L8A8MPP1 907 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 ALAS1P13196 640 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 HOXA7P31268 230 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 HOXA13P31271 388 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 ZNF157P51786 506 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 MRPL12P52815 198 aaKnown RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 TMEM132BQ14DG7 1078 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 INF2Q27J81 1249 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 SPRYD7Q5W111 196 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 ANO1Q5XXA6 986 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 GPAT2Q6NUI2 795 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 FASTKD5Q7L8L6 764 aaKnown RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 FAM177A1Q8N128 213 aaPredicted RBP11.68□□□□□ -0.54
SRP54-208ENST00000555557 REPS2Q8NFH8 660 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 BICD2Q8TD16 824 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 HOMER2Q9NSB8 354 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 RTEL1Q9NZ71 1219 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 ADAMTS5Q9UNA0 930 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 RIPK3Q9Y572 518 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 SMCHD1A6NHR9 2005 aa11.68□□□□□ -0.54
SRP54-208ENST00000555557 MEIS2O14770 477 aa11.67□□□□□ -0.54
SRP54-208ENST00000555557 TOMM70O94826 608 aa11.67□□□□□ -0.54
SRP54-208ENST00000555557 HSPA6P17066 643 aa11.67□□□□□ -0.54
SRP54-208ENST00000555557 CLK2P49760 499 aaKnown RBP11.67□□□□□ -0.54
SRP54-208ENST00000555557 IRX3P78415 501 aaPredicted RBP11.67□□□□□ -0.54
SRP54-208ENST00000555557 ZNF174Q15697 407 aa11.67□□□□□ -0.54
SRP54-208ENST00000555557 RILPL1Q5EBL4 403 aa11.67□□□□□ -0.54
SRP54-208ENST00000555557 SCAND2PQ9GZW5 306 aaPredicted RBP11.67□□□□□ -0.54
SRP54-208ENST00000555557 ASCC2Q9H1I8 757 aaPredicted RBP11.67□□□□□ -0.54
SRP54-208ENST00000555557 CCL15-CCL14A0A0B4J2E2 113 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 CFBP00751 764 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 GTF2A2P52657 109 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 PLS1Q14651 629 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 CCL15Q16663 113 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 MUM1L1Q5H9M0 696 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 ATL3Q6DD88 541 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 LINC00301Q8NCQ3 95 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 TBCKQ8TEA7 893 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 BRI3BPQ8WY22 251 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 POLR3EQ9NVU0 708 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 RCOR1Q9UKL0 485 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 ZNF214Q9UL59 606 aaPredicted RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 MRPL11Q9Y3B7 192 aaKnown RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 MRVI1Q9Y6F6 885 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 PTPRFP10586 1907 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 BTBD19C9JJ37 291 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 NFIBO00712 420 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 CETPP11597 493 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 MARCKSP29966 332 aaPredicted RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 NASPP49321 788 aaPredicted RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 STK38Q15208 465 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 NONOQ15233 471 aaKnown RBP eCLIP11.66□□□□□ -0.54
SRP54-208ENST00000555557 PTPAQ15257 358 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 TTC38Q5R3I4 469 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 SNRNP48Q6IEG0 339 aaKnown RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 KRT25Q7Z3Z0 450 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 FCHSD1Q86WN1 690 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 TMEM87AQ8NBN3 555 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 CLEC4DQ8WXI8 215 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 BTBD7Q9P203 1132 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 ABT1Q9ULW3 272 aaKnown RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 NOL7Q9UMY1 257 aaKnown RBP11.66□□□□□ -0.54
SRP54-208ENST00000555557 ABCB11O95342 1321 aa11.66□□□□□ -0.54
SRP54-208ENST00000555557 ZBTB48P10074 688 aaPredicted RBP11.65□□□□□ -0.54
SRP54-208ENST00000555557 FDX1P10109 184 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 CYP2C8P10632 490 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 MCM7P33993 719 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 HERVK_113P62684 666 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 TRAF1Q13077 416 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 RGMBQ6NW40 437 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 LBX2Q6XYB7 198 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 RASAL3Q86YV0 1011 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 PAGR1Q9BTK6 254 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 RLFQ13129 1914 aa11.65□□□□□ -0.54
SRP54-208ENST00000555557 MYPNQ86TC9 1320 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 PDHXO00330 501 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 SPTLC2O15270 562 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 EDIL3O43854 480 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 STAT3P40763 770 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 SLC39A14Q15043 492 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 LETM2Q2VYF4 491 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 FAM43AQ8N2R8 423 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 GPT2Q8TD30 523 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 PTPN18Q99952 460 aa11.64□□□□□ -0.55
SRP54-208ENST00000555557 GLT8D2Q9H1C3 349 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms