RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PAQR3Q6TCH7 311 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 SLC9A7Q96T83 725 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 BCL2L13Q9BXK5 485 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 BCL11AQ9H165 835 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 DUSP10Q9Y6W6 482 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 PMF1-BGLAPU3KQ54 211 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 C9IYK1 514 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 F8W031 263 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-216ENST00000555550 GSNP06396 782 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 FBLN1P23142 703 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 MC3RP41968 323 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 PRR5P85299 388 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 ZNF326Q5BKZ1 582 aaKnown RBP6.72□□□□□ -1.33
SCFD1-216ENST00000555550 MYRFQ9Y2G1 1151 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 FAN1Q9Y2M0 1017 aa6.72□□□□□ -1.33
SCFD1-216ENST00000555550 CYBBP04839 570 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 TACR1P25103 407 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 SAPCD2Q86UD0 394 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 C7orf61Q8IZ16 206 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 GIPC2Q8TF65 315 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 BCAS3Q9H6U6 928 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 ADAMTS1Q9UHI8 967 aa6.71□□□□□ -1.34
SCFD1-216ENST00000555550 H0Y8X5 98 aa6.7□□□□□ -1.34
SCFD1-216ENST00000555550 TNFRSF10CO14798 259 aa6.7□□□□□ -1.34
SCFD1-216ENST00000555550 BRF1Q92994 677 aa6.7□□□□□ -1.34
SCFD1-216ENST00000555550 RXFP1Q9HBX9 757 aa6.7□□□□□ -1.34
SCFD1-216ENST00000555550 PDLIM7Q9NR12 457 aa6.7□□□□□ -1.34
SCFD1-216ENST00000555550 DBR1Q9UK59 544 aaKnown RBP6.7□□□□□ -1.34
SCFD1-216ENST00000555550 SHOXO15266 292 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 CNR2P34972 360 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 HTRA3P83110 453 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 DLX2Q07687 328 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-216ENST00000555550 ZNF827Q17R98 1081 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 CWF19L1Q69YN2 538 aaKnown RBP6.69□□□□□ -1.34
SCFD1-216ENST00000555550 CCDC144CPQ8IYA2 1237 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 REXO1Q8N1G1 1221 aaKnown RBP6.69□□□□□ -1.34
SCFD1-216ENST00000555550 PALD1Q9ULE6 856 aa6.69□□□□□ -1.34
SCFD1-216ENST00000555550 SRGAP3O43295 1099 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 ACRP10323 421 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 MAGEA10P43363 369 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-216ENST00000555550 APOBRQ0VD83 1088 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 LRRFIP1Q32MZ4 808 aaKnown RBP6.68□□□□□ -1.34
SCFD1-216ENST00000555550 TDRD10Q5VZ19 366 aaKnown RBP6.68□□□□□ -1.34
SCFD1-216ENST00000555550 DCAF15Q66K64 600 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 USP48Q86UV5 1035 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 PRR13Q9NZ81 148 aa6.68□□□□□ -1.34
SCFD1-216ENST00000555550 SUCOQ9UBS9 1254 aaKnown RBP6.68□□□□□ -1.34
SCFD1-216ENST00000555550 SH3D21A4FU49 640 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 FGF10O15520 208 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-216ENST00000555550 AKAP8O43823 692 aaKnown RBP6.67□□□□□ -1.34
SCFD1-216ENST00000555550 NOBOXO60393 691 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 ASGR2P07307 311 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 NCAM1P13591 858 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 ZNF165P49910 485 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 NOL9Q5SY16 702 aaKnown RBP6.67□□□□□ -1.34
SCFD1-216ENST00000555550 NKD1Q969G9 470 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 FCRL3Q96P31 734 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-216ENST00000555550 GGT7Q9UJ14 662 aa6.67□□□□□ -1.34
SCFD1-216ENST00000555550 MEIS3P2A8K0S8 358 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 ZNF445P59923 1031 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 CARFQ8N187 725 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 ALG3Q92685 438 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 DHRS1Q96LJ7 313 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 NOX5Q96PH1 765 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 FAM86C1Q9NVL1 165 aa6.66□□□□□ -1.34
SCFD1-216ENST00000555550 CNOT11Q9UKZ1 510 aaKnown RBP6.66□□□□□ -1.34
SCFD1-216ENST00000555550 TP53P04637 393 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-216ENST00000555550 NOP2P46087 812 aaKnown RBP6.65□□□□□ -1.34
SCFD1-216ENST00000555550 ADAM17P78536 824 aa6.65□□□□□ -1.34
SCFD1-216ENST00000555550 ZXDAP98168 799 aa6.65□□□□□ -1.34
SCFD1-216ENST00000555550 AXDND1Q5T1B0 1012 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-216ENST00000555550 LNPKQ9C0E8 428 aa6.65□□□□□ -1.34
SCFD1-216ENST00000555550 SMPD4Q9NXE4 827 aa6.65□□□□□ -1.34
SCFD1-216ENST00000555550 ITGB3P05106 788 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 IFNGR1P15260 489 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 INTS3Q68E01 1043 aaKnown RBP6.64□□□□□ -1.35
SCFD1-216ENST00000555550 CYP2R1Q6VVX0 501 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 PPFIBP1Q86W92 1011 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 SLITRK4Q8IW52 837 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 PTCHD1Q96NR3 888 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 SRRTQ9BXP5 876 aaKnown RBP6.64□□□□□ -1.35
SCFD1-216ENST00000555550 RNF38Q9H0F5 515 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 GP6Q9HCN6 339 aa6.64□□□□□ -1.35
SCFD1-216ENST00000555550 TBC1D8O95759 1140 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 TNFRSF1AP19438 455 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 PMLP29590 882 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 L1CAMP32004 1257 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 PMS1P54277 932 aaKnown RBP6.63□□□□□ -1.35
SCFD1-216ENST00000555550 MFAP1P55081 439 aaKnown RBP6.63□□□□□ -1.35
SCFD1-216ENST00000555550 B3GNT8Q7Z7M8 397 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 FIBCD1Q8N539 461 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 NLGN2Q8NFZ4 835 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 RBM15Q96T37 977 aaKnown RBP eCLIP6.63□□□□□ -1.35
SCFD1-216ENST00000555550 SPATA6Q9NWH7 488 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-216ENST00000555550 ZNF451Q9Y4E5 1061 aa6.63□□□□□ -1.35
SCFD1-216ENST00000555550 CD3EP07766 207 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 GLI4P10075 376 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 CD247P20963 164 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 SARSP49591 514 aaKnown RBP6.62□□□□□ -1.35
SCFD1-216ENST00000555550 GJA9P57773 515 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms