RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 SPRED2Q7Z698 418 aa7.91□□□□□ -1.14
LINC00643-203ENST00000555518 SMARCC1Q92922 1105 aaPredicted RBP7.91□□□□□ -1.14
LINC00643-203ENST00000555518 MEIS3Q99687 375 aa7.91□□□□□ -1.14
LINC00643-203ENST00000555518 WDR18Q9BV38 432 aa7.91□□□□□ -1.14
LINC00643-203ENST00000555518 TEX13AQ9BXU3 409 aaPredicted RBP7.91□□□□□ -1.14
LINC00643-203ENST00000555518 ZBTB1Q9Y2K1 713 aa7.91□□□□□ -1.14
LINC00643-203ENST00000555518 IGKV5-2P06315 115 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 KRTAP19-4Q3LI73 84 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 ZNF648Q5T619 568 aaPredicted RBP7.9□□□□□ -1.14
LINC00643-203ENST00000555518 SLC4A10Q6U841 1118 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 ZNF574Q6ZN55 896 aaPredicted RBP7.9□□□□□ -1.14
LINC00643-203ENST00000555518 TTLL7Q6ZT98 887 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 KSR1Q8IVT5 923 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 SIRT2Q8IXJ6 389 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 GLIS3Q8NEA6 775 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 FAM168AQ92567 244 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 SLC38A3Q99624 504 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 USP44Q9H0E7 712 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 RC3H2Q9HBD1 1191 aaKnown RBP7.9□□□□□ -1.14
LINC00643-203ENST00000555518 MAP3K2Q9Y2U5 619 aa7.9□□□□□ -1.14
LINC00643-203ENST00000555518 TAF1LQ8IZX4 1826 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 TMEM88BA6NKF7 163 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 DYNC1LI2O43237 492 aaPredicted RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 ALDH1L1O75891 902 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 CRKLP46109 303 aaKnown RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 AIMP1Q12904 312 aaKnown RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 HDAC1Q13547 482 aaPredicted RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 IFI16Q16666 785 aaKnown RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 FAM196AQ6ZSG2 479 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 WFDC3Q8IUB2 231 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 LINC00116Q8NCU8 138 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 BHLHE22Q8NFJ8 381 aaPredicted RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 PLBD2Q8NHP8 589 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 PI4K2BQ8TCG2 481 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 KRTAP4-9Q9BYQ8 210 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 SRCIN1Q9C0H9 1055 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 EHD4Q9H223 541 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 CCDC87Q9NVE4 849 aa7.89□□□□□ -1.15
LINC00643-203ENST00000555518 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.89□□□□□ -1.15
LINC00643-203ENST00000555518 UTYO14607 1347 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CNTNAP4Q9C0A0 1308 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CARNS1A5YM72 827 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 STARD3NLO95772 234 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 DDX58O95786 925 aaKnown RBP7.88□□□□□ -1.15
LINC00643-203ENST00000555518 FAM87AP0C7U9 286 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 EIF5P55010 431 aaKnown RBP7.88□□□□□ -1.15
LINC00643-203ENST00000555518 ID3Q02535 119 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CWF19L2Q2TBE0 894 aaKnown RBP7.88□□□□□ -1.15
LINC00643-203ENST00000555518 FBLN7Q53RD9 439 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CEP85Q6P2H3 762 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CENPQQ7L2Z9 268 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-203ENST00000555518 LINS1Q8NG48 757 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 KRT82Q9NSB4 513 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 CRIM1Q9NZV1 1036 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 EGFL7Q9UHF1 273 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 PPP1R9AQ9ULJ8 1098 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 USTQ9Y2C2 406 aa7.88□□□□□ -1.15
LINC00643-203ENST00000555518 TNS1Q9HBL0 1735 aaKnown RBP7.88□□□□□ -1.15
LINC00643-203ENST00000555518 BCORQ6W2J9 1755 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 TMEM265A0A087WTH1 108 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 TMPRSS2O15393 492 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 ABL1P00519 1130 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 NBPF7P0C2Y1 421 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-203ENST00000555518 IL6STP40189 918 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-203ENST00000555518 ARHGAP27Q6ZUM4 889 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 SKAP1Q86WV1 359 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 SMYD4Q8IYR2 804 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-203ENST00000555518 ANKRD44Q8N8A2 993 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 HRASLS5Q96KN8 279 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 CHMP4BQ9H444 224 aaKnown RBP7.87□□□□□ -1.15
LINC00643-203ENST00000555518 FAM53CQ9NYF3 392 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 BRPF3Q9ULD4 1205 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 EP400Q96L91 3159 aa7.87□□□□□ -1.15
LINC00643-203ENST00000555518 C4BP0C0L5 1744 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 COL15A1P39059 1388 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 MAP3K15Q6ZN16 1313 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 CPNE3O75131 537 aaKnown RBP7.86□□□□□ -1.15
LINC00643-203ENST00000555518 TRIM37O94972 964 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 ECEL1O95672 775 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 RNASE1P07998 156 aaKnown RBP7.86□□□□□ -1.15
LINC00643-203ENST00000555518 GNAI3P08754 354 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 CD8BP10966 210 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 CASP7P55210 303 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 BNIP3Q12983 259 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 GCKRQ14397 625 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 HLFQ16534 295 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 AMIGO3Q86WK7 504 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 SMC5Q8IY18 1101 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 PLD6Q8N2A8 252 aaKnown RBP7.86□□□□□ -1.15
LINC00643-203ENST00000555518 KAZALD1Q96I82 304 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 MYD88Q99836 296 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 ISCA1Q9BUE6 129 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 LRRFIP2Q9Y608 721 aaKnown RBP7.86□□□□□ -1.15
LINC00643-203ENST00000555518 AFDNP55196 1824 aaKnown RBP7.86□□□□□ -1.15
LINC00643-203ENST00000555518 ANKRD36CQ5JPF3 1778 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 SCN7AQ01118 1682 aa7.86□□□□□ -1.15
LINC00643-203ENST00000555518 NUP98P52948 1817 aa7.85□□□□□ -1.15
LINC00643-203ENST00000555518 RGPD3A6NKT7 1758 aaPredicted RBP7.85□□□□□ -1.15
LINC00643-203ENST00000555518 RGPD4Q7Z3J3 1758 aa7.85□□□□□ -1.15
LINC00643-203ENST00000555518 GRM8O00222 908 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms