RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NHLH1Q02575 133 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 KLRC3Q07444 240 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 SPRED2Q7Z698 418 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 HERC6Q8IVU3 1022 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 AMOTL1Q8IY63 956 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 GJD3Q8N144 294 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 TMEM57Q8N5G2 664 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 FAM133AQ8N9E0 248 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 FRAT1Q92837 279 aaPredicted RBP11.59□□□□□ -0.55
SCFD1-215ENST00000555259 KIFC2Q96AC6 838 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 TRMT13Q9NUP7 481 aaKnown RBP11.59□□□□□ -0.55
SCFD1-215ENST00000555259 CTDP1Q9Y5B0 961 aaPredicted RBP11.59□□□□□ -0.55
SCFD1-215ENST00000555259 GOLIM4O00461 696 aa11.58□□□□□ -0.55
SCFD1-215ENST00000555259 SUPT20HL2P0C7V6 817 aa11.58□□□□□ -0.55
SCFD1-215ENST00000555259 FAM178BQ8IXR5 827 aa11.58□□□□□ -0.55
SCFD1-215ENST00000555259 UIMC1Q96RL1 719 aa11.58□□□□□ -0.55
SCFD1-215ENST00000555259 SCN5AQ14524 2016 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 COL4A4P53420 1690 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-215ENST00000555259 KIF28PB7ZC32 967 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 OAZ1P54368 228 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 SLFNL1Q499Z3 407 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 DNAJC2Q99543 621 aaKnown RBP11.58□□□□□ -0.56
SCFD1-215ENST00000555259 PDGFCQ9NRA1 345 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 HOMER2Q9NSB8 354 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 LMCD1Q9NZU5 365 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 Q9Y3F1 56 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 TNKSO95271 1327 aa11.58□□□□□ -0.56
SCFD1-215ENST00000555259 GREB1LQ9C091 1923 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-215ENST00000555259 SOWAHBA6NEL2 793 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 ASB14A6NK59 587 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 ALADP13716 330 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 RFC2P35250 354 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 CSPP1Q1MSJ5 1256 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 TMEM63BQ5T3F8 832 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 GDPD5Q8WTR4 605 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 UBE2ZQ9H832 354 aaPredicted RBP11.57□□□□□ -0.56
SCFD1-215ENST00000555259 ACAD9Q9H845 621 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 A1CFQ9NQ94 594 aaKnown RBP11.57□□□□□ -0.56
SCFD1-215ENST00000555259 NYAP2Q9P242 653 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 DDX49Q9Y6V7 483 aaKnown RBP11.57□□□□□ -0.56
SCFD1-215ENST00000555259 TRIOO75962 3097 aa11.57□□□□□ -0.56
SCFD1-215ENST00000555259 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-215ENST00000555259 SSTR3P32745 418 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-215ENST00000555259 ADD2P35612 726 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 LEXMQ3ZCV2 418 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 IQSEC1Q6DN90 963 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 TAPT1Q6NXT6 567 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 CTR9Q6PD62 1173 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 ZBED9Q6R2W3 1325 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 ERC1Q8IUD2 1116 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 FBXO16Q8IX29 292 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-215ENST00000555259 DDRGK1Q96HY6 314 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 FBXL18Q96ME1 805 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 CFAP54Q96N23 3096 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 KCNH6Q9H252 994 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 FEM1BQ9UK73 627 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 EXOC6BQ9Y2D4 811 aa11.56□□□□□ -0.56
SCFD1-215ENST00000555259 LCHNA4D1U4 455 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 IQCF3P0C7M6 154 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 KCNA5P22460 613 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 EEPD1Q7L9B9 569 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-215ENST00000555259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.55□□□□□ -0.56
SCFD1-215ENST00000555259 FTOQ9C0B1 505 aaKnown RBP eCLIP11.55□□□□□ -0.56
SCFD1-215ENST00000555259 IL1RAPL2Q9NP60 686 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 COG6Q9Y2V7 657 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 TET1Q8NFU7 2136 aa11.55□□□□□ -0.56
SCFD1-215ENST00000555259 ZNF536O15090 1300 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 PITPNM1O00562 1244 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 BAIAP3O94812 1187 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 IL9P15248 144 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 RASA1P20936 1047 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 PURAQ00577 322 aaKnown RBP11.54□□□□□ -0.56
SCFD1-215ENST00000555259 RNF146Q9NTX7 359 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 CLIP2Q9UDT6 1046 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 SLC4A4Q9Y6R1 1079 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 C5orf42Q9H799 3197 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 TANC1Q9C0D5 1861 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 CHGBP05060 677 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 FAM47CQ5HY64 1035 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 PTCRAQ6ISU1 281 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-215ENST00000555259 KIAA1211Q6ZU35 1233 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 TMCO2Q7Z6W1 182 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-215ENST00000555259 RETREG2Q8NC44 543 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 SUGCTQ9HAC7 445 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 VTA1Q9NP79 307 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 POLR3EQ9NVU0 708 aa11.54□□□□□ -0.56
SCFD1-215ENST00000555259 ARPP21Q9UBL0 812 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-215ENST00000555259 ZNF318Q5VUA4 2279 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 PTPRSQ13332 1948 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 IGKV6D-41A0A0C4DH26 115 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 DCXO43602 365 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 FDX1P10109 184 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 KCNJ6P48051 423 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 WDR5P61964 334 aaKnown RBP11.53□□□□□ -0.56
SCFD1-215ENST00000555259 DUSP28Q4G0W2 176 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 CEP85Q6P2H3 762 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 STK11IPQ8N1F8 1099 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 RHPN1Q8TCX5 695 aa11.53□□□□□ -0.56
SCFD1-215ENST00000555259 MKL1Q969V6 931 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms