RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 C15orf52Q6ZUT6 534 aaKnown RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 ZNF804AQ7Z570 1209 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 GJD4Q96KN9 370 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 PANX2Q96RD6 677 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 TMEM47Q9BQJ4 181 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 NAA15Q9BXJ9 866 aaKnown RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 MRPL44Q9H9J2 332 aaKnown RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 DACH1Q9UI36 760 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 SUFUQ9UMX1 484 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 CTAGE15A4D2H0 777 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 PHACTR2O75167 634 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 UFL1O94874 794 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 CTAGE8P0CG41 777 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 BTDP43251 543 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 TRAPPC10P48553 1259 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 CRY2Q49AN0 593 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 CTAGE6Q86UF2 777 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 CTAGE4Q8IX94 777 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 AFAP1L1Q8TED9 768 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 LZTFL1Q9NQ48 299 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 PCDHA4Q9UN74 947 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 SNED1Q8TER0 1413 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 DDX60LQ5H9U9 1706 aaKnown RBP13.72□□□□□ -0.21
SHMT2-207ENST00000553837 A0A1B0GTH6 734 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 AKR1B15C9JRZ8 316 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-207ENST00000553837 RHOXF2BP0C7M4 288 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 TSPY3P0CV98 308 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 TSPY8P0CW00 308 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 VSNL1P62760 191 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 WHAMMP3Q1A5X7 153 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 MICALL1Q8N3F8 863 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 RHOXF2Q9BQY4 288 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 IRX2Q9BZI1 471 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-207ENST00000553837 TMEM60Q9H2L4 133 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 SUGCTQ9HAC7 445 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 TCP11L1Q9NUJ3 509 aa13.72□□□□□ -0.21
SHMT2-207ENST00000553837 SYNRGQ9UMZ2 1314 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 PALM3A6NDB9 673 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-207ENST00000553837 BAG3O95817 575 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 AARSP49588 968 aaKnown RBP eCLIP13.71□□□□□ -0.21
SHMT2-207ENST00000553837 GSTO1P78417 241 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 MAP2K1Q02750 393 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-207ENST00000553837 ZNF569Q5MCW4 686 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 CDKAL1Q5VV42 579 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 SPATA1Q5VX52 437 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 RPGRQ92834 1020 aaKnown RBP13.71□□□□□ -0.21
SHMT2-207ENST00000553837 GSDMAQ96QA5 445 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 POLLQ9UGP5 575 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 PCDHA6Q9UN73 950 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 STX8Q9UNK0 236 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 PCDHA8Q9Y5H6 950 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 ADGRG1Q9Y653 693 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 UBR3Q6ZT12 1888 aa13.71□□□□□ -0.21
SHMT2-207ENST00000553837 PP2D1A8MPX8 630 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 ANKRD65E5RJM6 399 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 STXBP3O00186 592 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 SERPINB2P05120 415 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 IL1R1P14778 569 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 RHBDL3P58872 404 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 WDR93Q6P2C0 686 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 ZNF444Q8N0Y2 327 aaPredicted RBP13.71□□□□□ -0.22
SHMT2-207ENST00000553837 TACO1Q9BSH4 297 aaKnown RBP13.71□□□□□ -0.22
SHMT2-207ENST00000553837 SH3GLB2Q9NR46 395 aa13.71□□□□□ -0.22
SHMT2-207ENST00000553837 GPR75-ASB3A0A0A6YYF3 556 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 RNF40O75150 1001 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 CALML3P27482 149 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 USP8P40818 1118 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 CDK8P49336 464 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 DDR1Q08345 913 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 LRRC15Q8TF66 581 aa13.7□□□□□ -0.22
SHMT2-207ENST00000553837 LRRIQ3A6PVS8 624 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-207ENST00000553837 ERLIN2O94905 339 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 MCM3P25205 808 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 PBX1P40424 430 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 MTF1Q14872 753 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 INF2Q27J81 1249 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 HEATR3Q7Z4Q2 680 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 SEPT12Q8IYM1 358 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 ANKRD20A12PQ8NF67 263 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 ADD3Q9UEY8 706 aaKnown RBP13.69□□□□□ -0.22
SHMT2-207ENST00000553837 CTNND2Q9UQB3 1225 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 FLT1P17948 1338 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 SOWAHDA6NJG2 315 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 KIF3CO14782 793 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 PPP1R12AO14974 1030 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-207ENST00000553837 LDHCP07864 332 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 MAP2K2P36507 400 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 NAALADL2Q58DX5 795 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 C16orf86Q6ZW13 317 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 PPFIBP1Q86W92 1011 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 TEX11Q8IYF3 940 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 TBC1D16Q8TBP0 767 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 EYA3Q99504 573 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 BARHL2Q9NY43 387 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 GGA1Q9UJY5 639 aa13.69□□□□□ -0.22
SHMT2-207ENST00000553837 MAP9Q49MG5 647 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 MFSD14BQ5SR56 506 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 ARL6IP4Q66PJ3 421 aaKnown RBP13.68□□□□□ -0.22
SHMT2-207ENST00000553837 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
SHMT2-207ENST00000553837 NAPGQ99747 312 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms