RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 GJA9P57773 515 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 SNAP25P60880 206 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 TNFAIP2Q03169 654 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 CCDC178Q5BJE1 867 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 SYDE2Q5VT97 1194 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 CWC27Q6UX04 472 aaKnown RBP15□□□□□ -0.01
LINC00643-202ENST00000553426 BTNL9Q6UXG8 535 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 SH3RF1Q7Z6J0 888 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 EXOC6Q8TAG9 804 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 TRIM43Q96BQ3 446 aaPredicted RBP15□□□□□ -0.01
LINC00643-202ENST00000553426 FGD4Q96M96 766 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 COL25A1Q9BXS0 654 aaPredicted RBP15□□□□□ -0.01
LINC00643-202ENST00000553426 GPCPD1Q9NPB8 672 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 ADD3Q9UEY8 706 aaKnown RBP15□□□□□ -0.01
LINC00643-202ENST00000553426 EYSQ5T1H1 3165 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 KIAA0355O15063 1070 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 IGHDP01880 384 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 ASGR1P07306 291 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 SLC16A2P36021 539 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 ANKRD33Q7Z3H0 272 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 IQCA1Q86XH1 822 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 RANBP17Q9H2T7 1088 aaKnown RBP14.99□□□□□ -0.01
LINC00643-202ENST00000553426 CYP39A1Q9NYL5 469 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 STXBP5LQ9Y2K9 1186 aa14.99□□□□□ -0.01
LINC00643-202ENST00000553426 FRMPD2Q68DX3 1309 aaPredicted RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 A0A0U1RQG5 324 aaPredicted RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 SOWAHBA6NEL2 793 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 ZEB2O60315 1214 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 SHHQ15465 462 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 MUM1L1Q5H9M0 696 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 FAM109BQ6ICB4 259 aaPredicted RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 CCSAPQ6IQ19 270 aaPredicted RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 TTBK2Q6IQ55 1244 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 RASGRP2Q7LDG7 609 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 MPHOSPH6Q99547 160 aaKnown RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 AP5M1Q9H0R1 490 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 UPF3AQ9H1J1 476 aaKnown RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 CTNNA3Q9UI47 895 aa14.98□□□□□ -0.01
LINC00643-202ENST00000553426 LAMA2P24043 3122 aaKnown RBP14.98□□□□□ -0.01
LINC00643-202ENST00000553426 PTPDC1A2A3K4 754 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 MYADML2A6NDP7 307 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 CABYRO75952 493 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 PDHBP11177 359 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 FPGSQ05932 587 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 FAAP100Q0VG06 881 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 IMMTQ16891 758 aaKnown RBP14.97□□□□□ -0.01
LINC00643-202ENST00000553426 GPATCH4Q5T3I0 446 aaKnown RBP14.97□□□□□ -0.01
LINC00643-202ENST00000553426 ZNF697Q5TEC3 545 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 IQSEC1Q6DN90 963 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 DGKHQ86XP1 1220 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 KATNBL1Q9H079 304 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 VTA1Q9NP79 307 aa14.97□□□□□ -0.01
LINC00643-202ENST00000553426 LOC102724159A0A0B4J2E5 919 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 B4DLN1 442 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 ARVCFO00192 962 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 TLR3O15455 904 aaKnown RBP14.96□□□□□ -0.01
LINC00643-202ENST00000553426 ADCY6O43306 1168 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 MRPL12P52815 198 aaKnown RBP14.96□□□□□ -0.01
LINC00643-202ENST00000553426 ZNF543Q08ER8 600 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 BAATQ14032 418 aaPredicted RBP14.96□□□□□ -0.01
LINC00643-202ENST00000553426 PWP2Q15269 919 aaKnown RBP14.96□□□□□ -0.01
LINC00643-202ENST00000553426 FSCN1Q16658 493 aaKnown RBP14.96□□□□□ -0.01
LINC00643-202ENST00000553426 C9orf50Q5SZB4 431 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 TLK2Q86UE8 772 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 TBC1D10CQ8IV04 446 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 LTBP2Q14767 1821 aa14.96□□□□□ -0.01
LINC00643-202ENST00000553426 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.95□□□□□ -0.02
LINC00643-202ENST00000553426 DYNC1LI2O43237 492 aaPredicted RBP14.95□□□□□ -0.02
LINC00643-202ENST00000553426 TIMP1P01033 207 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 NKX3-2P78367 333 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 RNF207Q6ZRF8 634 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 KIAA1211Q6ZU35 1233 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 EEPD1Q7L9B9 569 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 FBXO16Q8IX29 292 aaPredicted RBP14.95□□□□□ -0.02
LINC00643-202ENST00000553426 RNPC3Q96LT9 517 aaKnown RBP14.95□□□□□ -0.02
LINC00643-202ENST00000553426 ZKSCAN3Q9BRR0 538 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 DSCC1Q9BVC3 393 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 SEZ6LQ9BYH1 1024 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 KRT23Q9C075 422 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 KAT14Q9H8E8 782 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 Q9Y3F1 56 aa14.95□□□□□ -0.02
LINC00643-202ENST00000553426 MCM3APO60318 1980 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 NEDD4P46934 1319 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 WDR19Q8NEZ3 1342 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 KDM4AO75164 1064 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 SNHG28P0DPA3 235 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 SMPD1P17405 629 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 ITGB8P26012 769 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 CALML3P27482 149 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 CDK7P50613 346 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 SMAD3P84022 425 aaKnown RBP14.94□□□□□ -0.02
LINC00643-202ENST00000553426 BEX3Q00994 111 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 CNNM2Q9H8M5 875 aa14.94□□□□□ -0.02
LINC00643-202ENST00000553426 GNEQ9Y223 722 aaKnown RBP14.94□□□□□ -0.02
LINC00643-202ENST00000553426 NFIBO00712 420 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 ALDH5A1P51649 535 aaPredicted RBP14.93□□□□□ -0.02
LINC00643-202ENST00000553426 IRX5P78411 483 aaPredicted RBP14.93□□□□□ -0.02
LINC00643-202ENST00000553426 PDE4DQ08499 809 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 PPIGQ13427 754 aaKnown RBP eCLIP14.93□□□□□ -0.02
LINC00643-202ENST00000553426 BRDTQ58F21 947 aaPredicted RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms