RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HLA-CQ95604 372 aa15.52■□□□□ 0.08
VPS29-211ENST00000553128 ALDH8A1Q9H2A2 487 aaPredicted RBP15.52■□□□□ 0.08
VPS29-211ENST00000553128 PIEZO1Q92508 2521 aa15.52■□□□□ 0.07
VPS29-211ENST00000553128 LPXNO60711 386 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 RASA1P20936 1047 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 GRB10Q13322 594 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 CHST13Q8NET6 341 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 RHPN1Q8TCX5 695 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 PPP1R13LQ8WUF5 828 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 BCL11AQ9H165 835 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 NYAP2Q9P242 653 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 SLC4A4Q9Y6R1 1079 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 SCN5AQ14524 2016 aa15.51■□□□□ 0.07
VPS29-211ENST00000553128 PI4K2BG5E9Z4 385 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 TAPT1Q6NXT6 567 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 EEPD1Q7L9B9 569 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 ERC1Q8IUD2 1116 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 ITPRIPQ8IWB1 547 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 FBXO16Q8IX29 292 aaPredicted RBP15.5■□□□□ 0.07
VPS29-211ENST00000553128 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.5■□□□□ 0.07
VPS29-211ENST00000553128 AP5M1Q9H0R1 490 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 A1CFQ9NQ94 594 aaKnown RBP15.5■□□□□ 0.07
VPS29-211ENST00000553128 PAG1Q9NWQ8 432 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 CLIP2Q9UDT6 1046 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 FBXO40Q9UH90 709 aa15.5■□□□□ 0.07
VPS29-211ENST00000553128 CTDP1Q9Y5B0 961 aaPredicted RBP15.5■□□□□ 0.07
VPS29-211ENST00000553128 AMOTL1Q8IY63 956 aa15.49■□□□□ 0.07
VPS29-211ENST00000553128 PURBQ96QR8 312 aaKnown RBP15.49■□□□□ 0.07
VPS29-211ENST00000553128 PUS7LQ9H0K6 701 aaKnown RBP15.49■□□□□ 0.07
VPS29-211ENST00000553128 BOLA2Q9H3K6 86 aa15.49■□□□□ 0.07
VPS29-211ENST00000553128 IGKV6D-41A0A0C4DH26 115 aa15.48■□□□□ 0.07
VPS29-211ENST00000553128 TMCO2Q7Z6W1 182 aaPredicted RBP15.48■□□□□ 0.07
VPS29-211ENST00000553128 HERC6Q8IVU3 1022 aa15.48■□□□□ 0.07
VPS29-211ENST00000553128 LRRC47Q8N1G4 583 aaKnown RBP15.48■□□□□ 0.07
VPS29-211ENST00000553128 CHMP4CQ96CF2 233 aa15.48■□□□□ 0.07
VPS29-211ENST00000553128 ACAD9Q9H845 621 aa15.48■□□□□ 0.07
VPS29-211ENST00000553128 COL4A4P53420 1690 aaPredicted RBP15.48■□□□□ 0.07
VPS29-211ENST00000553128 ZNF536O15090 1300 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 TNKSO95271 1327 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 LCHNA4D1U4 455 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 ZEB2O60315 1214 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 PFKMP08237 780 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 OAZ1P54368 228 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 GDPD5Q8WTR4 605 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 SLC9A7Q96T83 725 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 SEZ6LQ9BYH1 1024 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 RNF146Q9NTX7 359 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 FEM1BQ9UK73 627 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 COG6Q9Y2V7 657 aa15.47■□□□□ 0.07
VPS29-211ENST00000553128 ASB14A6NK59 587 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 PRDM1O75626 825 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 IFIT2P09913 472 aaKnown RBP15.46■□□□□ 0.07
VPS29-211ENST00000553128 SNAP25P60880 206 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 UBE3CQ15386 1083 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 FTSJ3Q8IY81 847 aaKnown RBP15.46■□□□□ 0.07
VPS29-211ENST00000553128 CEP95Q96GE4 821 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 MKNK2Q9HBH9 465 aa15.46■□□□□ 0.07
VPS29-211ENST00000553128 ARPP21Q9UBL0 812 aaPredicted RBP15.46■□□□□ 0.07
VPS29-211ENST00000553128 PRR33A8MZF0 331 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 TMEM232C9JQI7 657 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 MRE11P49959 708 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 PURAQ00577 322 aaKnown RBP15.45■□□□□ 0.06
VPS29-211ENST00000553128 MUM1L1Q5H9M0 696 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 IQSEC1Q6DN90 963 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 KIAA1211Q6ZU35 1233 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 CLASRPQ8N2M8 674 aaKnown RBP15.45■□□□□ 0.06
VPS29-211ENST00000553128 PHOSPHO2Q8TCD6 241 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 MKL1Q969V6 931 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 DDRGK1Q96HY6 314 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 TRERF1Q96PN7 1200 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 Q9Y3F1 56 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 PTPRSQ13332 1948 aa15.45■□□□□ 0.06
VPS29-211ENST00000553128 BRWD1Q9NSI6 2320 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 GSG1L2A8MUP6 293 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 MINDY4BA8MYZ0 360 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 IQCF3P0C7M6 154 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 SUPT20HL2P0C7V6 817 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 BMP3P12645 472 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 ACTN1P12814 892 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 SBK1Q52WX2 424 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 SLFN13Q68D06 897 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 STRBPQ96SI9 672 aaKnown RBP15.44■□□□□ 0.06
VPS29-211ENST00000553128 HAUS7Q99871 368 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 FTOQ9C0B1 505 aaKnown RBP eCLIP15.44■□□□□ 0.06
VPS29-211ENST00000553128 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.44■□□□□ 0.06
VPS29-211ENST00000553128 MTMR4Q9NYA4 1195 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 CYP39A1Q9NYL5 469 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 MYH4Q9Y623 1939 aa15.44■□□□□ 0.06
VPS29-211ENST00000553128 LCTP09848 1927 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 MYL3P08590 195 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 ALAS1P13196 640 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 NBPF20Q3BBV1 942 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 RASGRP2Q7LDG7 609 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 FAM178BQ8IXR5 827 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 GJD3Q8N144 294 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 GMCL1P1Q8NEA9 526 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.43■□□□□ 0.06
VPS29-211ENST00000553128 UIMC1Q96RL1 719 aa15.43■□□□□ 0.06
VPS29-211ENST00000553128 UBE2ZQ9H832 354 aaPredicted RBP15.43■□□□□ 0.06
VPS29-211ENST00000553128 EPB41L4AQ9HCS5 686 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms